Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0484 and PP_0485 are separated by 9 nucleotides PP_0485 and PP_0486 are separated by 90 nucleotides
PP_0484: PP_0484 - transporter of an unknown substrate, at 569,625 to 571,019
_0484
PP_0485: PP_0485 - Single-stranded DNA-binding protein, at 571,029 to 571,574
_0485
PP_0486: PP_0486 - Transcriptional regulator, GntR family, at 571,665 to 573,089
_0486
Position (kb) 571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 570.393 kb on + strand, within PP_0484 at 570.394 kb on - strand at 570.394 kb on - strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.444 kb on + strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.445 kb on - strand, within PP_0484 at 570.514 kb on + strand, within PP_0484 at 570.515 kb on - strand, within PP_0484 at 570.516 kb on + strand, within PP_0484 at 570.516 kb on + strand, within PP_0484 at 570.516 kb on + strand, within PP_0484 at 570.663 kb on + strand, within PP_0484 at 570.773 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.813 kb on + strand, within PP_0484 at 570.936 kb on + strand at 570.936 kb on + strand at 570.938 kb on + strand at 571.669 kb on + strand at 571.890 kb on - strand, within PP_0486 at 571.890 kb on - strand, within PP_0486 at 571.890 kb on - strand, within PP_0486 at 571.921 kb on + strand, within PP_0486 at 571.922 kb on - strand, within PP_0486 at 571.979 kb on + strand, within PP_0486 at 572.068 kb on - strand, within PP_0486 at 572.068 kb on - strand, within PP_0486 at 572.080 kb on - strand, within PP_0486 at 572.107 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.161 kb on + strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.162 kb on - strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.163 kb on + strand, within PP_0486 at 572.164 kb on - strand, within PP_0486 at 572.164 kb on - strand, within PP_0486 at 572.182 kb on + strand, within PP_0486 at 572.182 kb on + strand, within PP_0486 at 572.200 kb on + strand, within PP_0486 at 572.200 kb on + strand, within PP_0486 at 572.227 kb on + strand, within PP_0486 at 572.227 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.231 kb on + strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.232 kb on - strand, within PP_0486 at 572.454 kb on + strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.455 kb on - strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.556 kb on + strand, within PP_0486 at 572.557 kb on - strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.559 kb on + strand, within PP_0486 at 572.560 kb on - strand, within PP_0486 at 572.560 kb on - strand, within PP_0486
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 570,393 + PP_0484 0.55 +0.8 570,394 - +0.8 570,394 - PP_0484 0.55 -1.2 570,444 + PP_0484 0.59 -1.7 570,444 + PP_0484 0.59 -1.7 570,444 + PP_0484 0.59 -1.4 570,445 - PP_0484 0.59 +0.8 570,445 - PP_0484 0.59 +0.6 570,445 - PP_0484 0.59 -1.1 570,514 + PP_0484 0.64 -1.3 570,515 - PP_0484 0.64 +0.5 570,516 + PP_0484 0.64 -0.3 570,516 + PP_0484 0.64 -1.0 570,516 + PP_0484 0.64 -1.4 570,663 + PP_0484 0.74 -1.9 570,773 + PP_0484 0.82 -2.2 570,813 + PP_0484 0.85 +0.0 570,813 + PP_0484 0.85 +0.8 570,813 + PP_0484 0.85 -0.1 570,936 + +2.2 570,936 + -1.7 570,938 + -2.1 571,669 + +3.2 571,890 - PP_0486 0.16 +0.4 571,890 - PP_0486 0.16 -0.8 571,890 - PP_0486 0.16 -3.3 571,921 + PP_0486 0.18 +0.1 571,922 - PP_0486 0.18 +0.4 571,979 + PP_0486 0.22 -3.1 572,068 - PP_0486 0.28 +0.9 572,068 - PP_0486 0.28 -1.9 572,080 - PP_0486 0.29 -1.7 572,107 + PP_0486 0.31 -1.1 572,161 + PP_0486 0.35 -1.2 572,161 + PP_0486 0.35 +0.5 572,161 + PP_0486 0.35 +0.8 572,162 - PP_0486 0.35 +0.9 572,162 - PP_0486 0.35 -3.5 572,162 - PP_0486 0.35 -0.2 572,162 - PP_0486 0.35 -0.9 572,162 - PP_0486 0.35 +0.9 572,162 - PP_0486 0.35 -0.2 572,163 + PP_0486 0.35 -1.6 572,163 + PP_0486 0.35 +0.5 572,163 + PP_0486 0.35 +0.0 572,164 - PP_0486 0.35 -3.5 572,164 - PP_0486 0.35 +1.7 572,182 + PP_0486 0.36 -0.0 572,182 + PP_0486 0.36 -0.2 572,200 + PP_0486 0.38 -1.0 572,200 + PP_0486 0.38 -0.4 572,227 + PP_0486 0.39 +0.4 572,227 + PP_0486 0.39 +1.2 572,231 + PP_0486 0.40 +0.7 572,231 + PP_0486 0.40 -3.3 572,231 + PP_0486 0.40 -0.8 572,232 - PP_0486 0.40 +1.1 572,232 - PP_0486 0.40 +1.6 572,232 - PP_0486 0.40 +0.0 572,232 - PP_0486 0.40 -0.7 572,454 + PP_0486 0.55 +0.1 572,455 - PP_0486 0.55 +1.7 572,455 - PP_0486 0.55 +0.7 572,455 - PP_0486 0.55 -0.7 572,556 + PP_0486 0.63 -0.2 572,556 + PP_0486 0.63 -2.9 572,556 + PP_0486 0.63 -1.3 572,557 - PP_0486 0.63 -0.6 572,559 + PP_0486 0.63 -2.9 572,559 + PP_0486 0.63 +1.5 572,560 - PP_0486 0.63 -0.3 572,560 - PP_0486 0.63 -0.9
Or see this region's nucleotide sequence