Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0269 and PP_0270 are separated by 149 nucleotides PP_0270 and PP_0271 are separated by 1 nucleotides PP_0271 and PP_0272 are separated by 140 nucleotides
PP_0269: PP_0269 - putative Glutamate synthase, large subunit, at 326,065 to 327,732
_0269
PP_0270: PP_0270 - Sensor histidine kinase, at 327,882 to 329,249
_0270
PP_0271: PP_0271 - DNA-binding response regulator, at 329,251 to 329,970
_0271
PP_0272: PP_0272 - Outer membrane ferric siderophore receptor, at 330,111 to 332,408
_0272
Position (kb) 327
328
329
330 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 327.089 kb on + strand, within PP_0269 at 327.270 kb on - strand, within PP_0269 at 327.431 kb on + strand, within PP_0269 at 327.492 kb on - strand, within PP_0269 at 327.534 kb on + strand, within PP_0269 at 327.535 kb on - strand, within PP_0269 at 327.694 kb on + strand at 327.695 kb on - strand at 327.763 kb on - strand at 327.763 kb on - strand at 327.767 kb on + strand at 327.767 kb on + strand at 327.797 kb on + strand at 327.815 kb on + strand at 327.815 kb on + strand at 327.849 kb on + strand at 327.849 kb on + strand at 327.849 kb on + strand at 327.849 kb on + strand at 327.849 kb on + strand at 327.850 kb on - strand at 327.850 kb on - strand at 327.850 kb on - strand at 327.850 kb on - strand at 327.897 kb on + strand at 327.897 kb on + strand at 327.897 kb on + strand at 327.898 kb on - strand at 327.898 kb on - strand at 327.898 kb on - strand at 327.898 kb on - strand at 327.898 kb on - strand at 327.936 kb on + strand at 327.937 kb on - strand at 327.937 kb on - strand at 328.150 kb on + strand, within PP_0270 at 328.358 kb on + strand at 328.358 kb on + strand, within PP_0270 at 328.358 kb on + strand, within PP_0270 at 328.358 kb on + strand, within PP_0270 at 328.358 kb on + strand, within PP_0270 at 328.358 kb on + strand, within PP_0270 at 328.358 kb on + strand, within PP_0270 at 328.358 kb on + strand, within PP_0270 at 328.359 kb on - strand, within PP_0270 at 328.359 kb on - strand, within PP_0270 at 328.359 kb on - strand, within PP_0270 at 328.359 kb on - strand, within PP_0270 at 328.483 kb on + strand, within PP_0270 at 328.483 kb on + strand, within PP_0270 at 328.484 kb on - strand, within PP_0270 at 328.484 kb on - strand, within PP_0270 at 328.699 kb on + strand, within PP_0270 at 328.700 kb on - strand, within PP_0270 at 328.700 kb on - strand, within PP_0270 at 328.715 kb on - strand, within PP_0270 at 328.817 kb on + strand, within PP_0270 at 328.905 kb on + strand, within PP_0270 at 328.905 kb on + strand, within PP_0270 at 328.906 kb on - strand, within PP_0270 at 328.906 kb on - strand, within PP_0270 at 328.906 kb on - strand, within PP_0270 at 328.930 kb on + strand, within PP_0270 at 328.931 kb on - strand, within PP_0270 at 329.027 kb on - strand, within PP_0270 at 329.027 kb on - strand, within PP_0270 at 329.049 kb on - strand, within PP_0270 at 329.107 kb on - strand, within PP_0270 at 329.118 kb on + strand at 329.288 kb on + strand at 329.288 kb on + strand at 329.288 kb on + strand at 329.289 kb on - strand at 329.480 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.580 kb on + strand, within PP_0271 at 329.581 kb on - strand, within PP_0271 at 329.623 kb on + strand, within PP_0271 at 329.624 kb on - strand, within PP_0271 at 329.676 kb on - strand, within PP_0271 at 329.784 kb on + strand, within PP_0271 at 329.785 kb on - strand, within PP_0271 at 329.910 kb on - strand at 329.910 kb on - strand at 330.011 kb on + strand at 330.012 kb on - strand at 330.012 kb on - strand at 330.022 kb on - strand at 330.022 kb on - strand at 330.022 kb on - strand at 330.022 kb on - strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.031 kb on + strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.032 kb on - strand at 330.032 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 327,089 + PP_0269 0.61 -0.4 327,270 - PP_0269 0.72 -1.1 327,431 + PP_0269 0.82 -2.3 327,492 - PP_0269 0.86 -2.0 327,534 + PP_0269 0.88 -1.9 327,535 - PP_0269 0.88 +1.0 327,694 + -0.6 327,695 - -0.2 327,763 - -2.8 327,763 - +1.4 327,767 + +1.3 327,767 + +2.2 327,797 + -3.5 327,815 + +0.3 327,815 + +1.1 327,849 + +0.9 327,849 + -1.6 327,849 + -1.8 327,849 + -1.0 327,849 + -0.0 327,850 - +0.7 327,850 - +3.3 327,850 - -0.3 327,850 - -1.6 327,897 + +5.4 327,897 + -0.6 327,897 + -3.1 327,898 - -2.9 327,898 - -0.7 327,898 - -1.8 327,898 - -1.0 327,898 - -3.0 327,936 + +1.4 327,937 - +3.3 327,937 - +1.9 328,150 + PP_0270 0.20 -3.9 328,358 + +2.2 328,358 + PP_0270 0.35 -2.6 328,358 + PP_0270 0.35 +0.3 328,358 + PP_0270 0.35 -1.7 328,358 + PP_0270 0.35 +1.2 328,358 + PP_0270 0.35 +0.6 328,358 + PP_0270 0.35 +2.2 328,358 + PP_0270 0.35 -3.1 328,359 - PP_0270 0.35 -1.8 328,359 - PP_0270 0.35 +4.0 328,359 - PP_0270 0.35 -0.3 328,359 - PP_0270 0.35 +0.9 328,483 + PP_0270 0.44 +0.9 328,483 + PP_0270 0.44 +0.0 328,484 - PP_0270 0.44 +1.9 328,484 - PP_0270 0.44 +1.2 328,699 + PP_0270 0.60 -2.1 328,700 - PP_0270 0.60 -0.2 328,700 - PP_0270 0.60 +4.5 328,715 - PP_0270 0.61 +2.0 328,817 + PP_0270 0.68 +1.7 328,905 + PP_0270 0.75 +0.4 328,905 + PP_0270 0.75 -2.4 328,906 - PP_0270 0.75 -0.7 328,906 - PP_0270 0.75 +0.5 328,906 - PP_0270 0.75 +0.7 328,930 + PP_0270 0.77 +0.0 328,931 - PP_0270 0.77 -2.3 329,027 - PP_0270 0.84 +0.6 329,027 - PP_0270 0.84 -0.7 329,049 - PP_0270 0.85 +0.8 329,107 - PP_0270 0.90 -1.8 329,118 + +0.8 329,288 + +1.0 329,288 + -0.1 329,288 + -1.1 329,289 - -1.6 329,480 + PP_0271 0.32 +1.7 329,580 + PP_0271 0.46 -0.1 329,580 + PP_0271 0.46 -0.6 329,580 + PP_0271 0.46 -0.8 329,580 + PP_0271 0.46 -0.0 329,580 + PP_0271 0.46 +0.1 329,581 - PP_0271 0.46 -1.3 329,623 + PP_0271 0.52 -1.7 329,624 - PP_0271 0.52 -0.5 329,676 - PP_0271 0.59 +0.5 329,784 + PP_0271 0.74 +0.4 329,785 - PP_0271 0.74 -3.5 329,910 - +0.3 329,910 - +1.8 330,011 + +3.8 330,012 - -2.6 330,012 - -1.0 330,022 - -1.2 330,022 - +0.4 330,022 - -0.9 330,022 - +1.7 330,031 + -0.6 330,031 + -1.2 330,031 + +0.6 330,031 + -1.6 330,031 + +0.7 330,031 + -0.2 330,032 - +1.1 330,032 - -2.0 330,032 - +1.2 330,032 - -0.0 330,032 - -0.1
Or see this region's nucleotide sequence