Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0235 and PP_0236 are separated by 219 nucleotides PP_0236 and PP_0237 are separated by 85 nucleotides PP_0237 and PP_0238 are separated by 59 nucleotides
PP_0235: PP_0235 - Peroxidase, at 290,082 to 290,720
_0235
PP_0236: PP_0236 - NAD(P)H-dependent FMN reductase subunit, at 290,940 to 291,533
_0236
PP_0237: PP_0237 - aliphatic sulfonate ABC transporter - periplasmic binding protein / transport of isethionate, at 291,619 to 292,584
_0237
PP_0238: PP_0238 - alkanesulfonate monooxygenase, at 292,644 to 293,792
_0238
Position (kb) 291
292
293 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 290.688 kb on + strand at 290.689 kb on - strand at 290.745 kb on - strand at 290.903 kb on + strand at 290.904 kb on - strand at 291.294 kb on + strand, within PP_0236 at 291.406 kb on + strand, within PP_0236 at 291.407 kb on - strand, within PP_0236 at 291.407 kb on - strand, within PP_0236 at 291.558 kb on + strand at 291.794 kb on + strand, within PP_0237 at 291.795 kb on - strand, within PP_0237 at 291.795 kb on - strand, within PP_0237 at 291.925 kb on + strand, within PP_0237 at 291.925 kb on + strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.926 kb on - strand, within PP_0237 at 291.963 kb on + strand, within PP_0237 at 291.963 kb on + strand, within PP_0237 at 292.051 kb on + strand, within PP_0237 at 292.051 kb on + strand, within PP_0237 at 292.051 kb on + strand, within PP_0237 at 292.052 kb on - strand, within PP_0237 at 292.052 kb on - strand, within PP_0237 at 292.090 kb on + strand, within PP_0237 at 292.111 kb on + strand, within PP_0237 at 292.112 kb on - strand, within PP_0237 at 292.112 kb on - strand, within PP_0237 at 292.261 kb on + strand, within PP_0237 at 292.279 kb on + strand, within PP_0237 at 292.280 kb on - strand, within PP_0237 at 292.280 kb on - strand, within PP_0237 at 292.280 kb on - strand, within PP_0237 at 292.439 kb on - strand, within PP_0237 at 292.518 kb on - strand at 292.652 kb on + strand at 292.692 kb on + strand at 292.693 kb on - strand at 292.693 kb on - strand at 292.693 kb on - strand at 292.734 kb on + strand at 292.870 kb on + strand, within PP_0238 at 292.871 kb on - strand, within PP_0238 at 293.113 kb on + strand, within PP_0238 at 293.114 kb on - strand, within PP_0238 at 293.133 kb on + strand, within PP_0238 at 293.167 kb on - strand, within PP_0238 at 293.309 kb on - strand, within PP_0238
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 290,688 + +0.5 290,689 - -1.3 290,745 - -0.5 290,903 + +3.8 290,904 - -0.7 291,294 + PP_0236 0.60 +3.5 291,406 + PP_0236 0.78 +0.7 291,407 - PP_0236 0.79 +0.7 291,407 - PP_0236 0.79 -1.5 291,558 + -0.8 291,794 + PP_0237 0.18 +1.1 291,795 - PP_0237 0.18 -0.1 291,795 - PP_0237 0.18 +0.6 291,925 + PP_0237 0.32 -0.3 291,925 + PP_0237 0.32 -1.4 291,926 - PP_0237 0.32 +0.8 291,926 - PP_0237 0.32 +1.8 291,926 - PP_0237 0.32 +1.9 291,926 - PP_0237 0.32 +0.6 291,926 - PP_0237 0.32 +0.3 291,963 + PP_0237 0.36 +1.4 291,963 + PP_0237 0.36 +2.0 292,051 + PP_0237 0.45 +0.2 292,051 + PP_0237 0.45 -0.0 292,051 + PP_0237 0.45 +1.0 292,052 - PP_0237 0.45 -0.5 292,052 - PP_0237 0.45 +0.4 292,090 + PP_0237 0.49 -0.0 292,111 + PP_0237 0.51 -1.5 292,112 - PP_0237 0.51 -0.3 292,112 - PP_0237 0.51 +2.3 292,261 + PP_0237 0.66 +0.8 292,279 + PP_0237 0.68 -3.5 292,280 - PP_0237 0.68 +0.3 292,280 - PP_0237 0.68 +1.7 292,280 - PP_0237 0.68 +2.8 292,439 - PP_0237 0.85 +2.3 292,518 - +1.5 292,652 + -2.7 292,692 + -0.1 292,693 - +2.7 292,693 - +0.0 292,693 - -0.4 292,734 + -0.0 292,870 + PP_0238 0.20 -1.5 292,871 - PP_0238 0.20 +0.7 293,113 + PP_0238 0.41 -1.4 293,114 - PP_0238 0.41 -0.8 293,133 + PP_0238 0.43 -2.8 293,167 - PP_0238 0.46 +0.5 293,309 - PP_0238 0.58 +0.9
Or see this region's nucleotide sequence