Strain Fitness in Pseudomonas putida KT2440 around PP_0170

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0169 and PP_0170 are separated by 17 nucleotidesPP_0170 and PP_0171 are separated by 6 nucleotidesPP_0171 and PP_0172 are separated by 14 nucleotides PP_0169: PP_0169 - Dioxygenase, TauD/TfdA family, at 221,229 to 222,128 _0169 PP_0170: PP_0170 - ABC transporter, periplasmic binding protein, at 222,146 to 223,165 _0170 PP_0171: PP_0171 - ABC transporter, ATP-binding protein, at 223,172 to 224,035 _0171 PP_0172: PP_0172 - ABC transporter, permease protein, at 224,050 to 224,913 _0172 Position (kb) 222 223 224Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 221.327 kb on - strand, within PP_0169at 221.327 kb on - strand, within PP_0169at 221.372 kb on + strand, within PP_0169at 221.423 kb on + strand, within PP_0169at 221.423 kb on + strand, within PP_0169at 221.423 kb on + strand, within PP_0169at 221.424 kb on - strand, within PP_0169at 221.470 kb on + strand, within PP_0169at 221.470 kb on + strand, within PP_0169at 221.471 kb on - strand, within PP_0169at 221.471 kb on - strand, within PP_0169at 221.602 kb on - strand, within PP_0169at 221.602 kb on - strand, within PP_0169at 221.687 kb on + strand, within PP_0169at 221.687 kb on + strand, within PP_0169at 221.688 kb on + strand, within PP_0169at 221.688 kb on - strand, within PP_0169at 221.688 kb on - strand, within PP_0169at 221.688 kb on - strand, within PP_0169at 221.704 kb on + strand, within PP_0169at 221.754 kb on + strand, within PP_0169at 221.755 kb on - strand, within PP_0169at 221.755 kb on - strand, within PP_0169at 221.757 kb on - strand, within PP_0169at 221.964 kb on + strand, within PP_0169at 221.964 kb on + strand, within PP_0169at 221.965 kb on - strand, within PP_0169at 221.965 kb on - strand, within PP_0169at 221.965 kb on - strand, within PP_0169at 221.994 kb on + strand, within PP_0169at 221.995 kb on - strand, within PP_0169at 222.016 kb on - strand, within PP_0169at 222.016 kb on - strand, within PP_0169at 222.093 kb on + strandat 222.253 kb on + strand, within PP_0170at 222.253 kb on + strand, within PP_0170at 222.515 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.518 kb on + strand, within PP_0170at 222.519 kb on - strand, within PP_0170at 222.578 kb on - strand, within PP_0170at 222.578 kb on - strand, within PP_0170at 222.627 kb on - strand, within PP_0170at 222.627 kb on - strand, within PP_0170at 222.659 kb on + strand, within PP_0170at 222.660 kb on - strand, within PP_0170at 222.660 kb on - strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.677 kb on + strand, within PP_0170at 222.678 kb on - strand, within PP_0170at 222.678 kb on - strand, within PP_0170at 222.678 kb on - strand, within PP_0170at 222.816 kb on - strand, within PP_0170at 222.822 kb on + strand, within PP_0170at 222.856 kb on + strand, within PP_0170at 222.890 kb on + strand, within PP_0170at 222.890 kb on + strand, within PP_0170at 222.965 kb on + strand, within PP_0170at 222.965 kb on + strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 222.966 kb on - strand, within PP_0170at 223.031 kb on + strand, within PP_0170at 223.046 kb on - strand, within PP_0170at 223.061 kb on + strand, within PP_0170at 223.062 kb on - strand, within PP_0170at 223.062 kb on - strand, within PP_0170at 223.127 kb on + strandat 223.267 kb on + strand, within PP_0171at 223.267 kb on + strand, within PP_0171at 223.268 kb on - strand, within PP_0171at 223.268 kb on - strand, within PP_0171at 223.335 kb on + strand, within PP_0171at 223.335 kb on + strand, within PP_0171at 223.336 kb on - strand, within PP_0171at 223.336 kb on - strand, within PP_0171at 223.622 kb on + strand, within PP_0171at 223.623 kb on - strand, within PP_0171at 223.623 kb on - strand, within PP_0171at 223.645 kb on + strand, within PP_0171at 223.646 kb on - strand, within PP_0171at 223.646 kb on - strand, within PP_0171at 223.891 kb on + strand, within PP_0171at 223.891 kb on + strand, within PP_0171at 223.892 kb on - strand, within PP_0171at 223.892 kb on - strand, within PP_0171at 223.892 kb on - strand, within PP_0171at 223.901 kb on + strand, within PP_0171at 223.952 kb on - strandat 223.981 kb on + strandat 224.058 kb on + strandat 224.059 kb on - strandat 224.059 kb on - strandat 224.059 kb on - strandat 224.077 kb on + strandat 224.078 kb on - strandat 224.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
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221,327 - PP_0169 0.11 -1.3
221,327 - PP_0169 0.11 -1.1
221,372 + PP_0169 0.16 -1.0
221,423 + PP_0169 0.22 -3.4
221,423 + PP_0169 0.22 -1.1
221,423 + PP_0169 0.22 -0.3
221,424 - PP_0169 0.22 +1.0
221,470 + PP_0169 0.27 +1.7
221,470 + PP_0169 0.27 +1.8
221,471 - PP_0169 0.27 -0.9
221,471 - PP_0169 0.27 +0.2
221,602 - PP_0169 0.41 -2.1
221,602 - PP_0169 0.41 -4.1
221,687 + PP_0169 0.51 -0.1
221,687 + PP_0169 0.51 -1.5
221,688 + PP_0169 0.51 +1.6
221,688 - PP_0169 0.51 -0.2
221,688 - PP_0169 0.51 +0.2
221,688 - PP_0169 0.51 +0.3
221,704 + PP_0169 0.53 +1.1
221,754 + PP_0169 0.58 -2.8
221,755 - PP_0169 0.58 +1.2
221,755 - PP_0169 0.58 -1.2
221,757 - PP_0169 0.59 -1.2
221,964 + PP_0169 0.82 +0.3
221,964 + PP_0169 0.82 +0.7
221,965 - PP_0169 0.82 +0.2
221,965 - PP_0169 0.82 -2.6
221,965 - PP_0169 0.82 -1.4
221,994 + PP_0169 0.85 -1.8
221,995 - PP_0169 0.85 -0.5
222,016 - PP_0169 0.87 +0.9
222,016 - PP_0169 0.87 +1.9
222,093 + -2.9
222,253 + PP_0170 0.10 -0.3
222,253 + PP_0170 0.10 +0.8
222,515 + PP_0170 0.36 +1.5
222,518 + PP_0170 0.36 +0.5
222,518 + PP_0170 0.36 +1.6
222,518 + PP_0170 0.36 -0.1
222,518 + PP_0170 0.36 +0.2
222,519 - PP_0170 0.37 +1.0
222,578 - PP_0170 0.42 -0.5
222,578 - PP_0170 0.42 -1.9
222,627 - PP_0170 0.47 +0.4
222,627 - PP_0170 0.47 -0.2
222,659 + PP_0170 0.50 -1.7
222,660 - PP_0170 0.50 +0.8
222,660 - PP_0170 0.50 -0.5
222,677 + PP_0170 0.52 +1.7
222,677 + PP_0170 0.52 +0.5
222,677 + PP_0170 0.52 -0.9
222,677 + PP_0170 0.52 +1.5
222,677 + PP_0170 0.52 -1.2
222,678 - PP_0170 0.52 +2.8
222,678 - PP_0170 0.52 +1.9
222,678 - PP_0170 0.52 +0.7
222,816 - PP_0170 0.66 +0.8
222,822 + PP_0170 0.66 +0.3
222,856 + PP_0170 0.70 -3.5
222,890 + PP_0170 0.73 +0.3
222,890 + PP_0170 0.73 +0.2
222,965 + PP_0170 0.80 -0.8
222,965 + PP_0170 0.80 +0.5
222,966 - PP_0170 0.80 +0.9
222,966 - PP_0170 0.80 -3.2
222,966 - PP_0170 0.80 -0.8
222,966 - PP_0170 0.80 +3.3
222,966 - PP_0170 0.80 -0.5
222,966 - PP_0170 0.80 -0.0
222,966 - PP_0170 0.80 +1.4
222,966 - PP_0170 0.80 +1.3
222,966 - PP_0170 0.80 +2.0
223,031 + PP_0170 0.87 -1.9
223,046 - PP_0170 0.88 +2.7
223,061 + PP_0170 0.90 +3.1
223,062 - PP_0170 0.90 -1.7
223,062 - PP_0170 0.90 +1.4
223,127 + -0.7
223,267 + PP_0171 0.11 -0.4
223,267 + PP_0171 0.11 -2.5
223,268 - PP_0171 0.11 +0.0
223,268 - PP_0171 0.11 +0.3
223,335 + PP_0171 0.19 +1.8
223,335 + PP_0171 0.19 +1.5
223,336 - PP_0171 0.19 +0.7
223,336 - PP_0171 0.19 -0.7
223,622 + PP_0171 0.52 -0.3
223,623 - PP_0171 0.52 +0.4
223,623 - PP_0171 0.52 +1.2
223,645 + PP_0171 0.55 -0.5
223,646 - PP_0171 0.55 -1.0
223,646 - PP_0171 0.55 +1.8
223,891 + PP_0171 0.83 -3.7
223,891 + PP_0171 0.83 +1.5
223,892 - PP_0171 0.83 -0.3
223,892 - PP_0171 0.83 -1.7
223,892 - PP_0171 0.83 -0.6
223,901 + PP_0171 0.84 -1.4
223,952 - -1.6
223,981 + -1.1
224,058 + +0.6
224,059 - +0.4
224,059 - +0.9
224,059 - -1.7
224,077 + -3.4
224,078 - -0.8
224,115 - +3.4

Or see this region's nucleotide sequence