Strain Fitness in Pseudomonas simiae WCS417 around PS417_04885

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
1,083,562	+		PS417_04880	0.28	+0.8
1,083,655	-		PS417_04880	0.37	-0.1
1,083,655	-				+1.0
1,083,655	-		PS417_04880	0.37	-0.2
1,083,792	-		PS417_04880	0.51	+0.4
1,083,792	-		PS417_04880	0.51	-0.5
1,083,824	+		PS417_04880	0.55	+0.1
1,083,828	+		PS417_04880	0.55	+0.3
1,083,828	+		PS417_04880	0.55	+0.7
1,083,829	-		PS417_04880	0.55	-0.1
1,083,829	-		PS417_04880	0.55	+0.4
1,083,874	+		PS417_04880	0.60	+0.3
1,083,874	+				+0.6
1,083,879	-		PS417_04880	0.60	-0.3
1,083,879	-		PS417_04880	0.60	+0.1
1,083,883	-		PS417_04880	0.61	-1.0
1,083,883	-		PS417_04880	0.61	+1.0
1,083,984	+		PS417_04880	0.71	-0.8
1,083,985	-		PS417_04880	0.71	-0.1
1,083,996	-		PS417_04880	0.72	+0.2
1,084,031	-		PS417_04880	0.76	-0.2
1,084,263	+				+1.4
1,084,318	+				+0.9
1,084,392	-				-1.6
1,084,495	+				-0.8
1,084,496	-				+0.6
1,084,496	-				+0.1
1,084,685	+				+0.4
1,084,685	+				-1.8
1,084,686	-				-0.3
1,084,710	+				-0.1
1,084,711	-				-1.7
1,084,737	-				+1.0
1,084,853	+		PS417_04885	0.11	-2.4
1,084,853	+		PS417_04885	0.11	+0.5
1,084,854	-		PS417_04885	0.11	+0.6
1,084,854	-		PS417_04885	0.11	-1.0
1,084,866	+		PS417_04885	0.11	+0.5
1,084,866	+		PS417_04885	0.11	-0.4
1,084,936	+		PS417_04885	0.13	+0.3
1,084,947	+		PS417_04885	0.13	+2.8
1,084,947	+		PS417_04885	0.13	+0.3
1,084,947	+		PS417_04885	0.13	-0.5
1,084,948	-		PS417_04885	0.13	-2.0
1,084,967	+		PS417_04885	0.14	+0.7
1,084,968	-		PS417_04885	0.14	+1.2
1,084,975	+		PS417_04885	0.14	+2.7
1,084,975	+		PS417_04885	0.14	-0.4
1,084,975	+		PS417_04885	0.14	-2.1
1,084,976	-		PS417_04885	0.14	+0.5
1,085,002	+		PS417_04885	0.14	-0.1
1,085,003	-		PS417_04885	0.14	-1.0
1,085,003	-		PS417_04885	0.14	+0.2
1,085,003	-		PS417_04885	0.14	-0.0
1,085,090	+		PS417_04885	0.16	-1.6
1,085,112	-		PS417_04885	0.17	-0.3
1,085,126	+		PS417_04885	0.17	+0.4
1,085,127	-		PS417_04885	0.17	+0.4
1,085,127	-		PS417_04885	0.17	+1.1
1,085,188	+		PS417_04885	0.18	+0.1
1,085,188	+		PS417_04885	0.18	-1.4
1,085,189	-		PS417_04885	0.18	-0.4
1,085,192	+		PS417_04885	0.18	+1.6
1,085,193	-		PS417_04885	0.18	-0.0
1,085,193	-		PS417_04885	0.18	+0.5
1,085,193	-		PS417_04885	0.18	+0.4
1,085,198	+		PS417_04885	0.18	+0.5
1,085,198	+		PS417_04885	0.18	+0.3
1,085,198	+		PS417_04885	0.18	-0.9
1,085,267	+		PS417_04885	0.20	+2.0
1,085,267	+		PS417_04885	0.20	+0.3
1,085,285	+		PS417_04885	0.20	+0.1
1,085,285	+		PS417_04885	0.20	-0.8
1,085,286	-		PS417_04885	0.20	+0.5
1,085,286	-		PS417_04885	0.20	+0.6
1,085,291	+		PS417_04885	0.20	+0.5
1,085,342	+		PS417_04885	0.21	-0.1
1,085,343	-		PS417_04885	0.21	+1.1
1,085,343	-		PS417_04885	0.21	+1.2
1,085,343	-		PS417_04885	0.21	+2.3
1,085,360	+		PS417_04885	0.22	+0.6
1,085,360	+		PS417_04885	0.22	+0.8
1,085,360	+		PS417_04885	0.22	+1.0
1,085,360	+		PS417_04885	0.22	-0.0
1,085,360	+				+1.6
1,085,360	+		PS417_04885	0.22	+0.2
1,085,361	-		PS417_04885	0.22	+0.4
1,085,361	-		PS417_04885	0.22	+0.9
1,085,361	-		PS417_04885	0.22	-1.0
1,085,433	-		PS417_04885	0.23	+2.3
1,085,435	-		PS417_04885	0.23	+0.7
1,085,567	+		PS417_04885	0.26	+0.6
1,085,580	+		PS417_04885	0.26	+3.4
1,085,581	-		PS417_04885	0.26	+0.1
1,085,621	+		PS417_04885	0.27	+1.0
1,085,621	+		PS417_04885	0.27	-0.4
1,085,621	+		PS417_04885	0.27	-2.1
1,085,621	+		PS417_04885	0.27	-0.8
1,085,621	-				-0.3
1,085,622	-		PS417_04885	0.27	+0.3
1,085,622	-		PS417_04885	0.27	+0.4
1,085,625	-		PS417_04885	0.27	+0.9
1,085,752	+		PS417_04885	0.30	-1.0
1,085,753	-		PS417_04885	0.30	-2.0
1,085,753	-		PS417_04885	0.30	+0.3
1,085,780	+		PS417_04885	0.31	+1.0
1,085,781	-		PS417_04885	0.31	+3.6
1,085,781	-		PS417_04885	0.31	-0.8
1,085,833	+		PS417_04885	0.32	-1.3
1,085,833	+		PS417_04885	0.32	-0.4
1,085,834	-		PS417_04885	0.32	+0.3
1,085,837	+		PS417_04885	0.32	+2.8
1,085,837	+		PS417_04885	0.32	-1.4
1,085,838	-		PS417_04885	0.32	-0.8
1,085,838	-		PS417_04885	0.32	-0.9
1,085,838	-		PS417_04885	0.32	-0.2
1,085,838	-		PS417_04885	0.32	-2.5
1,085,838	-		PS417_04885	0.32	-0.8
1,085,838	-		PS417_04885	0.32	-2.4
1,085,840	+		PS417_04885	0.32	-0.0
1,085,840	+		PS417_04885	0.32	-1.1
1,085,924	+		PS417_04885	0.34	-0.3
1,086,146	+		PS417_04885	0.38	+1.2
1,086,305	+		PS417_04885	0.42	+0.6
1,086,383	+		PS417_04885	0.43	+0.6
1,086,383	+		PS417_04885	0.43	+0.3
1,086,384	-				-0.0
1,086,384	-		PS417_04885	0.43	-0.2
1,086,384	-		PS417_04885	0.43	+0.6
1,086,389	+		PS417_04885	0.43	+0.2
1,086,389	+		PS417_04885	0.43	-0.3
1,086,389	+		PS417_04885	0.43	+1.6
1,086,389	+		PS417_04885	0.43	+0.2
1,086,389	+		PS417_04885	0.43	-0.8
1,086,389	+		PS417_04885	0.43	-2.3
1,086,390	-		PS417_04885	0.43	+0.2
1,086,390	-		PS417_04885	0.43	+0.2
1,086,390	-		PS417_04885	0.43	+0.2
1,086,390	-				-1.0
1,086,452	+		PS417_04885	0.45	+0.6
1,086,513	-		PS417_04885	0.46	+0.7
1,086,593	+		PS417_04885	0.48	+1.2
1,086,593	+		PS417_04885	0.48	-0.6
1,086,593	+		PS417_04885	0.48	-1.9
1,086,594	-		PS417_04885	0.48	-1.5
1,086,594	-		PS417_04885	0.48	-0.6
1,086,594	-		PS417_04885	0.48	-1.6
1,086,628	+		PS417_04885	0.48	-0.4
1,086,631	+		PS417_04885	0.48	+1.1
1,086,631	+		PS417_04885	0.48	+0.6
1,086,632	-		PS417_04885	0.48	-1.8
1,086,632	-		PS417_04885	0.48	-0.8
1,086,655	+		PS417_04885	0.49	-1.0
1,086,659	+		PS417_04885	0.49	+2.0
1,086,659	+		PS417_04885	0.49	+1.3
1,086,659	+		PS417_04885	0.49	-1.3
1,086,659	+		PS417_04885	0.49	-0.2
1,086,659	+				-1.0
1,086,660	-		PS417_04885	0.49	+1.1
1,086,660	-		PS417_04885	0.49	-0.5
1,086,660	-		PS417_04885	0.49	+1.1
1,086,660	-		PS417_04885	0.49	+0.2
1,086,737	+		PS417_04885	0.51	-0.6
1,086,805	+		PS417_04885	0.52	+0.2
1,086,805	+		PS417_04885	0.52	-0.3
1,086,806	-		PS417_04885	0.52	+0.4
1,086,809	+		PS417_04885	0.52	+0.4
1,086,810	-		PS417_04885	0.52	+1.0
1,086,810	-		PS417_04885	0.52	+1.2
1,086,872	+		PS417_04885	0.54	+0.6
1,086,903	+		PS417_04885	0.54	-1.3
1,086,939	-		PS417_04885	0.55	-0.3
1,086,957	+		PS417_04885	0.55	-2.0
1,087,015	+		PS417_04885	0.57	+0.2
1,087,015	+		PS417_04885	0.57	+0.5
1,087,134	-		PS417_04885	0.59	-0.3
1,087,134	-		PS417_04885	0.59	+0.0
1,087,207	+		PS417_04885	0.61	+0.3
1,087,208	-				-0.4
1,087,212	-		PS417_04885	0.61	-0.5
1,087,334	+		PS417_04885	0.63	-0.8
1,087,334	+		PS417_04885	0.63	-1.8
1,087,334	+		PS417_04885	0.63	+0.1
1,087,334	+		PS417_04885	0.63	-0.4
1,087,384	-		PS417_04885	0.64	-0.9
1,087,384	-		PS417_04885	0.64	-0.4
1,087,384	-		PS417_04885	0.64	+0.2
1,087,405	+		PS417_04885	0.65	+0.5
1,087,405	+		PS417_04885	0.65	+0.7
1,087,405	+		PS417_04885	0.65	+0.5
1,087,406	-		PS417_04885	0.65	+0.6
1,087,406	-		PS417_04885	0.65	-2.3
1,087,406	-		PS417_04885	0.65	+0.3
1,087,406	-				+0.6
1,087,406	-		PS417_04885	0.65	-0.4
1,087,406	-		PS417_04885	0.65	+0.2
1,087,409	+		PS417_04885	0.65	+0.6
1,087,409	+		PS417_04885	0.65	+0.4
1,087,409	+		PS417_04885	0.65	+0.3
1,087,409	+		PS417_04885	0.65	-0.6
1,087,410	-		PS417_04885	0.65	+2.5
1,087,410	-		PS417_04885	0.65	+0.3
1,087,487	+		PS417_04885	0.66	-3.0
1,087,488	-		PS417_04885	0.66	-0.4
1,087,500	+		PS417_04885	0.67	-0.1
1,087,500	+		PS417_04885	0.67	-2.4
1,087,584	+		PS417_04885	0.68	+0.3
1,087,585	-		PS417_04885	0.68	-2.0
1,087,730	+		PS417_04885	0.72	+0.6
1,087,730	+		PS417_04885	0.72	-1.3
1,087,775	+		PS417_04885	0.72	-0.0
1,087,775	+		PS417_04885	0.72	+0.1
1,087,775	+		PS417_04885	0.72	-1.0
1,087,777	+		PS417_04885	0.72	+1.4
1,087,777	+		PS417_04885	0.72	+0.1
1,087,777	+		PS417_04885	0.72	+1.7
1,087,777	+		PS417_04885	0.72	+0.3
1,087,777	+		PS417_04885	0.72	-0.6
1,087,778	-		PS417_04885	0.73	+0.1
1,087,778	-		PS417_04885	0.73	-0.2
1,087,778	-		PS417_04885	0.73	-0.2
1,087,778	-		PS417_04885	0.73	+0.8
1,087,778	-		PS417_04885	0.73	-1.0
1,087,781	+		PS417_04885	0.73	+1.3
1,087,781	+		PS417_04885	0.73	-0.5
1,087,782	-		PS417_04885	0.73	-1.2
1,087,782	-		PS417_04885	0.73	-0.6
1,087,829	+		PS417_04885	0.74	-0.7
1,087,829	+		PS417_04885	0.74	+0.0
1,087,830	-		PS417_04885	0.74	-0.3
1,087,836	-		PS417_04885	0.74	-0.7
1,087,904	+		PS417_04885	0.75	+0.8
1,087,904	+		PS417_04885	0.75	-0.0
1,087,904	+		PS417_04885	0.75	+2.0
1,087,906	+		PS417_04885	0.75	+2.4
1,088,015	+		PS417_04885	0.77	-0.9
1,088,015	+		PS417_04885	0.77	+1.2
1,088,015	+		PS417_04885	0.77	+2.3
1,088,084	+		PS417_04885	0.79	+0.7
1,088,085	-		PS417_04885	0.79	-0.4
1,088,184	+		PS417_04885	0.81	-2.8
1,088,185	-		PS417_04885	0.81	+0.8
1,088,198	+		PS417_04885	0.81	-0.0
1,088,199	-		PS417_04885	0.81	-1.6
1,088,199	-		PS417_04885	0.81	-1.6
1,088,244	+		PS417_04885	0.82	+1.6
1,088,245	-		PS417_04885	0.82	-1.8
1,088,315	-		PS417_04885	0.84	-0.0
1,088,315	-		PS417_04885	0.84	-0.7
1,088,470	-		PS417_04885	0.87	-0.1
1,088,470	-		PS417_04885	0.87	+0.2
1,088,473	-		PS417_04885	0.87	-0.7
1,088,514	+		PS417_04885	0.88	+1.3
1,088,515	-		PS417_04885	0.88	-0.5
1,088,533	+		PS417_04885	0.88	-0.1
1,088,535	+		PS417_04885	0.88	-3.2
1,088,535	+		PS417_04885	0.88	+0.4
1,088,535	+		PS417_04885	0.88	+0.0
1,088,535	+		PS417_04885	0.88	-0.4
1,088,536	-		PS417_04885	0.88	-0.3
1,088,536	-		PS417_04885	0.88	-0.3
1,088,536	-		PS417_04885	0.88	+0.7
1,088,639	+				+0.6
1,088,697	+				-1.8
1,088,785	+				-0.5
1,088,786	-				+0.8
1,088,815	+				+0.6
1,088,854	+				+0.5
1,089,033	+				-0.4
1,089,037	+				+0.3
1,089,038	-				-1.0
1,089,087	-				-1.7
1,089,169	-				-1.1
1,089,172	+				-0.0
1,089,172	+				-1.3
1,089,172	+				-0.7
1,089,173	-				+1.8
1,089,173	-				+0.6
1,089,173	-				+2.0
1,089,333	+				+0.2
1,089,333	+				+0.6
1,089,375	+		PS417_04890	0.12	-0.4
1,089,375	+		PS417_04890	0.12	+2.5
1,089,376	-		PS417_04890	0.12	+0.1
1,089,380	-		PS417_04890	0.12	+1.4
1,089,380	-		PS417_04890	0.12	-3.4
1,089,655	+		PS417_04890	0.31	-0.9
1,089,656	-				+1.0
1,089,656	-		PS417_04890	0.31	+0.2
1,089,667	+		PS417_04890	0.32	-0.4
1,089,667	+		PS417_04890	0.32	-1.4
1,089,668	-				+1.6
1,089,668	-		PS417_04890	0.32	-0.8
1,089,691	+		PS417_04890	0.33	-0.2
1,089,691	+		PS417_04890	0.33	-0.1
1,089,691	+		PS417_04890	0.33	+0.2
1,089,691	+		PS417_04890	0.33	-0.3
1,089,691	+		PS417_04890	0.33	-1.8
1,089,691	+		PS417_04890	0.33	-1.5
1,089,691	+		PS417_04890	0.33	+0.9
1,089,692	-		PS417_04890	0.33	+1.6
1,089,692	-		PS417_04890	0.33	+0.6
1,089,692	-				+2.0
1,089,692	-		PS417_04890	0.33	-1.2
1,089,692	-		PS417_04890	0.33	+0.7
1,089,692	-		PS417_04890	0.33	-1.3
1,089,692	-				-0.4
1,089,692	-		PS417_04890	0.33	+0.4
1,089,909	+		PS417_04890	0.48	-2.7
1,089,922	-		PS417_04890	0.49	+0.8
1,089,922	-		PS417_04890	0.49	+0.0
1,089,922	-		PS417_04890	0.49	-0.1
1,089,922	-		PS417_04890	0.49	+0.2
1,090,056	+		PS417_04890	0.58	+1.0
1,090,056	+		PS417_04890	0.58	-0.8
1,090,057	-		PS417_04890	0.58	-0.5
1,090,057	-		PS417_04890	0.58	+1.6
1,090,057	-		PS417_04890	0.58	-0.1
1,090,057	-		PS417_04890	0.58	-1.7
1,090,072	+		PS417_04890	0.59	-1.2