Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04510 and PS417_04515 are separated by 242 nucleotides PS417_04515 and PS417_04520 are separated by 134 nucleotides PS417_04520 and PS417_04525 are separated by 260 nucleotides
PS417_04510: PS417_04510 - chemotaxis protein, at 995,339 to 997,477
_04510
PS417_04515: PS417_04515 - peptidase M48, at 997,720 to 998,538
_04515
PS417_04520: PS417_04520 - membrane protein, at 998,673 to 999,257
_04520
PS417_04525: PS417_04525 - 16S rRNA methyltransferase, at 999,518 to 1,000,516
_04525
Position (kb) 997
998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 996.720 kb on + strand, within PS417_04510 at 996.861 kb on + strand, within PS417_04510 at 996.862 kb on - strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.913 kb on - strand, within PS417_04510 at 996.913 kb on - strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 997.062 kb on + strand, within PS417_04510 at 997.062 kb on + strand, within PS417_04510 at 997.063 kb on - strand, within PS417_04510 at 997.108 kb on - strand, within PS417_04510 at 997.108 kb on - strand, within PS417_04510 at 997.395 kb on + strand at 997.395 kb on + strand at 997.501 kb on + strand at 997.501 kb on + strand at 997.609 kb on + strand at 997.609 kb on + strand at 997.647 kb on + strand at 997.648 kb on - strand at 997.674 kb on + strand at 997.675 kb on - strand at 997.739 kb on + strand at 997.740 kb on - strand at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.829 kb on - strand, within PS417_04515 at 997.829 kb on - strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 998.090 kb on - strand, within PS417_04515 at 998.291 kb on - strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.449 kb on - strand, within PS417_04515 at 998.516 kb on - strand at 998.543 kb on - strand at 998.562 kb on - strand at 998.608 kb on - strand at 998.608 kb on - strand at 998.674 kb on + strand at 998.674 kb on + strand at 998.675 kb on - strand at 998.675 kb on - strand at 998.704 kb on + strand at 998.705 kb on - strand at 998.705 kb on - strand at 998.705 kb on - strand at 999.262 kb on + strand at 999.263 kb on - strand at 999.335 kb on + strand at 999.335 kb on + strand at 999.336 kb on - strand at 999.405 kb on + strand at 999.405 kb on + strand at 999.405 kb on + strand at 999.405 kb on + strand at 999.406 kb on - strand at 999.406 kb on - strand at 999.406 kb on - strand at 999.406 kb on - strand at 999.447 kb on + strand at 999.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 996,720 + PS417_04510 0.65 -0.1 996,861 + PS417_04510 0.71 +0.7 996,862 - PS417_04510 0.71 +0.4 996,912 + PS417_04510 0.74 -2.9 996,912 + PS417_04510 0.74 -0.1 996,912 + PS417_04510 0.74 -0.8 996,913 - PS417_04510 0.74 -0.2 996,913 - PS417_04510 0.74 -0.4 996,915 + PS417_04510 0.74 +0.2 996,915 + PS417_04510 0.74 +0.5 996,915 + PS417_04510 0.74 -1.2 997,062 + PS417_04510 0.81 -1.1 997,062 + PS417_04510 0.81 -0.2 997,063 - PS417_04510 0.81 -1.6 997,108 - PS417_04510 0.83 +0.6 997,108 - PS417_04510 0.83 -0.5 997,395 + -1.5 997,395 + -0.0 997,501 + -2.0 997,501 + +0.3 997,609 + -0.5 997,609 + -0.2 997,647 + +0.4 997,648 - -0.2 997,674 + +1.0 997,675 - -0.2 997,739 + -1.2 997,740 - -0.4 997,828 + PS417_04515 0.13 +1.1 997,828 + PS417_04515 0.13 -1.0 997,828 + PS417_04515 0.13 -1.2 997,828 + PS417_04515 0.13 +0.6 997,829 - PS417_04515 0.13 +0.6 997,829 - PS417_04515 0.13 -0.4 997,870 + PS417_04515 0.18 -1.1 997,870 + PS417_04515 0.18 -1.0 997,870 + PS417_04515 0.18 +0.6 997,870 + PS417_04515 0.18 -1.7 997,870 + PS417_04515 0.18 -2.0 997,871 - PS417_04515 0.18 -0.4 997,871 - PS417_04515 0.18 -0.4 997,871 - PS417_04515 0.18 -0.8 997,871 - PS417_04515 0.18 -0.6 997,871 - PS417_04515 0.18 -0.4 997,871 - PS417_04515 0.18 -0.8 998,090 - PS417_04515 0.45 -0.0 998,291 - PS417_04515 0.70 -0.2 998,371 + PS417_04515 0.79 +2.6 998,371 + PS417_04515 0.79 -0.7 998,371 + PS417_04515 0.79 -2.8 998,449 - PS417_04515 0.89 +0.6 998,516 - -0.0 998,543 - -2.6 998,562 - -0.8 998,608 - -0.8 998,608 - -0.4 998,674 + +0.7 998,674 + -0.9 998,675 - +0.8 998,675 - +0.3 998,704 + -1.2 998,705 - -1.4 998,705 - -1.8 998,705 - +0.5 999,262 + -0.1 999,263 - +0.4 999,335 + -1.8 999,335 + +0.6 999,336 - +0.6 999,405 + -0.4 999,405 + +1.1 999,405 + -0.5 999,405 + -1.2 999,406 - -1.6 999,406 - +0.4 999,406 - -1.3 999,406 - -0.5 999,447 + -0.6 999,448 - +0.1
Or see this region's nucleotide sequence