Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04085 and PS417_04090 are separated by 90 nucleotides PS417_04090 and PS417_04095 are separated by 205 nucleotides
PS417_04085: PS417_04085 - peptide ABC transporter substrate-binding protein, at 918,258 to 919,859
_04085
PS417_04090: PS417_04090 - hypothetical protein, at 919,950 to 920,663
_04090
PS417_04095: PS417_04095 - histidine kinase, at 920,869 to 922,131
_04095
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 918.976 kb on + strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 918.977 kb on - strand, within PS417_04085 at 919.050 kb on - strand, within PS417_04085 at 919.174 kb on + strand, within PS417_04085 at 919.193 kb on - strand, within PS417_04085 at 919.301 kb on - strand, within PS417_04085 at 919.445 kb on - strand, within PS417_04085 at 919.462 kb on + strand, within PS417_04085 at 919.597 kb on + strand, within PS417_04085 at 919.772 kb on - strand at 919.772 kb on - strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 920.075 kb on - strand, within PS417_04090 at 920.122 kb on + strand, within PS417_04090 at 920.122 kb on + strand, within PS417_04090 at 920.213 kb on + strand, within PS417_04090 at 920.572 kb on + strand, within PS417_04090 at 920.572 kb on + strand, within PS417_04090 at 920.573 kb on - strand, within PS417_04090 at 920.679 kb on + strand at 920.700 kb on + strand at 920.701 kb on - strand at 920.826 kb on + strand at 921.184 kb on + strand, within PS417_04095 at 921.268 kb on + strand, within PS417_04095
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 918,976 + PS417_04085 0.45 +1.1 918,977 - PS417_04085 0.45 -1.2 918,977 - PS417_04085 0.45 -0.8 918,977 - PS417_04085 0.45 +0.1 919,050 - PS417_04085 0.49 +0.4 919,174 + PS417_04085 0.57 -0.2 919,193 - PS417_04085 0.58 +0.4 919,301 - PS417_04085 0.65 +0.4 919,445 - PS417_04085 0.74 +0.1 919,462 + PS417_04085 0.75 -0.6 919,597 + PS417_04085 0.84 -0.5 919,772 - +0.4 919,772 - +1.6 919,883 + +4.2 919,883 + +0.3 919,883 + +0.8 919,883 + -1.0 919,883 + -0.2 919,883 + -0.5 919,884 - +0.8 919,884 - +0.3 919,884 - +0.6 919,884 - -0.7 919,884 - +1.4 919,884 - +1.6 919,887 + +0.0 919,887 + -2.7 919,887 + -0.6 919,887 + +0.0 919,887 + -0.2 919,888 - +0.1 919,888 - +1.2 919,888 - -1.2 919,888 - -0.1 919,888 - -0.9 919,888 - -0.7 920,075 - PS417_04090 0.18 -1.7 920,122 + PS417_04090 0.24 -2.1 920,122 + PS417_04090 0.24 -1.2 920,213 + PS417_04090 0.37 +0.0 920,572 + PS417_04090 0.87 +0.4 920,572 + PS417_04090 0.87 +3.8 920,573 - PS417_04090 0.87 +1.5 920,679 + +1.4 920,700 + +0.4 920,701 - -2.2 920,826 + +0.2 921,184 + PS417_04095 0.25 +3.2 921,268 + PS417_04095 0.32 +1.9
Or see this region's nucleotide sequence