Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03965 and PS417_03970 are separated by 0 nucleotides PS417_03970 and PS417_03975 are separated by 11 nucleotides PS417_03975 and PS417_03980 are separated by 44 nucleotides
PS417_03965: PS417_03965 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components <small>(from data)</small>, at 885,528 to 888,386
_03965
PS417_03970: PS417_03970 - 1-phosphofructokinase, at 888,387 to 889,307
_03970
PS417_03975: PS417_03975 - FruA, at 889,319 to 891,028
_03975
PS417_03980: PS417_03980 - alkaline phosphatase, at 891,073 to 892,614
_03980
Position (kb) 889
890
891
892 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 888.383 kb on - strand at 888.384 kb on + strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 889.057 kb on - strand, within PS417_03970 at 889.305 kb on + strand at 889.306 kb on - strand at 889.306 kb on - strand at 889.511 kb on - strand, within PS417_03975 at 889.625 kb on + strand, within PS417_03975 at 889.626 kb on - strand, within PS417_03975 at 889.626 kb on - strand, within PS417_03975 at 889.626 kb on - strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.751 kb on + strand, within PS417_03975 at 889.751 kb on + strand, within PS417_03975 at 890.193 kb on - strand, within PS417_03975 at 890.201 kb on + strand, within PS417_03975 at 890.289 kb on + strand, within PS417_03975 at 890.573 kb on + strand, within PS417_03975 at 890.672 kb on - strand, within PS417_03975 at 890.846 kb on + strand, within PS417_03975 at 890.846 kb on + strand, within PS417_03975 at 890.846 kb on + strand, within PS417_03975 at 890.927 kb on + strand at 890.973 kb on - strand at 891.040 kb on - strand at 891.290 kb on + strand, within PS417_03980 at 891.559 kb on + strand, within PS417_03980 at 891.617 kb on - strand, within PS417_03980 at 891.676 kb on - strand, within PS417_03980 at 891.676 kb on - strand, within PS417_03980 at 891.733 kb on + strand, within PS417_03980 at 891.914 kb on - strand, within PS417_03980 at 891.914 kb on - strand, within PS417_03980 at 891.973 kb on + strand, within PS417_03980 at 891.974 kb on - strand, within PS417_03980
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 888,383 - +0.3 888,384 + -1.8 888,385 - +2.9 888,385 - +0.0 888,385 - -0.4 888,385 - +0.4 889,057 - PS417_03970 0.73 +1.0 889,305 + -2.9 889,306 - +0.2 889,306 - +0.7 889,511 - PS417_03975 0.11 +0.2 889,625 + PS417_03975 0.18 +0.9 889,626 - PS417_03975 0.18 +1.6 889,626 - PS417_03975 0.18 +1.6 889,626 - PS417_03975 0.18 +0.6 889,663 + PS417_03975 0.20 +0.3 889,663 + PS417_03975 0.20 +0.5 889,663 + PS417_03975 0.20 +0.6 889,663 + PS417_03975 0.20 +0.7 889,663 + PS417_03975 0.20 -0.3 889,663 + PS417_03975 0.20 -0.4 889,663 + PS417_03975 0.20 -0.7 889,663 + PS417_03975 0.20 -0.7 889,664 - PS417_03975 0.20 -0.2 889,664 - PS417_03975 0.20 +1.7 889,664 - PS417_03975 0.20 +1.6 889,664 - PS417_03975 0.20 +1.9 889,664 - PS417_03975 0.20 +0.3 889,751 + PS417_03975 0.25 +1.9 889,751 + PS417_03975 0.25 +0.8 890,193 - PS417_03975 0.51 +1.1 890,201 + PS417_03975 0.52 +1.6 890,289 + PS417_03975 0.57 +0.7 890,573 + PS417_03975 0.73 +0.8 890,672 - PS417_03975 0.79 +1.7 890,846 + PS417_03975 0.89 +0.5 890,846 + PS417_03975 0.89 +1.2 890,846 + PS417_03975 0.89 +0.8 890,927 + +0.0 890,973 - +1.7 891,040 - -0.2 891,290 + PS417_03980 0.14 +0.0 891,559 + PS417_03980 0.32 +0.6 891,617 - PS417_03980 0.35 -0.8 891,676 - PS417_03980 0.39 +0.9 891,676 - PS417_03980 0.39 +0.4 891,733 + PS417_03980 0.43 -0.4 891,914 - PS417_03980 0.55 -0.3 891,914 - PS417_03980 0.55 +0.2 891,973 + PS417_03980 0.58 +0.0 891,974 - PS417_03980 0.58 -0.2
Or see this region's nucleotide sequence