Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03950 and PS417_03955 overlap by 54 nucleotides PS417_03955 and PS417_03960 are separated by 2 nucleotides PS417_03960 and PS417_03965 are separated by 293 nucleotides
PS417_03950: PS417_03950 - hypothetical protein, at 883,082 to 883,513
_03950
PS417_03955: PS417_03955 - hydrolase TatD, at 883,460 to 884,236
_03955
PS417_03960: PS417_03960 - transcriptional regulator, at 884,239 to 885,234
_03960
PS417_03965: PS417_03965 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components <small>(from data)</small>, at 885,528 to 888,386
_03965
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1 at 883.380 kb on + strand, within PS417_03950 at 883.380 kb on + strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.381 kb on - strand, within PS417_03950 at 883.461 kb on + strand at 883.590 kb on + strand, within PS417_03955 at 883.629 kb on - strand, within PS417_03955 at 883.732 kb on - strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955 at 883.932 kb on + strand, within PS417_03955 at 884.118 kb on + strand, within PS417_03955 at 884.118 kb on + strand, within PS417_03955 at 884.118 kb on + strand, within PS417_03955 at 884.119 kb on - strand, within PS417_03955 at 884.119 kb on - strand, within PS417_03955 at 884.253 kb on + strand at 884.253 kb on + strand at 885.179 kb on + strand at 885.179 kb on + strand at 885.179 kb on + strand at 885.180 kb on - strand at 885.492 kb on + strand at 885.492 kb on + strand at 885.496 kb on + strand at 885.496 kb on + strand at 885.513 kb on - strand at 885.513 kb on - strand at 885.517 kb on - strand at 885.517 kb on - strand at 885.517 kb on - strand at 885.544 kb on + strand at 885.643 kb on - strand at 885.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 883,380 + PS417_03950 0.69 -0.2 883,380 + PS417_03950 0.69 +0.0 883,381 - PS417_03950 0.69 +1.7 883,381 - PS417_03950 0.69 +0.6 883,381 - PS417_03950 0.69 -0.5 883,381 - PS417_03950 0.69 +0.4 883,381 - PS417_03950 0.69 -2.6 883,461 + -2.1 883,590 + PS417_03955 0.17 -1.5 883,629 - PS417_03955 0.22 -0.5 883,732 - PS417_03955 0.35 -0.1 883,932 + PS417_03955 0.61 -1.0 883,932 + PS417_03955 0.61 +1.0 884,118 + PS417_03955 0.85 -1.0 884,118 + PS417_03955 0.85 -1.0 884,118 + PS417_03955 0.85 -0.5 884,119 - PS417_03955 0.85 -0.3 884,119 - PS417_03955 0.85 -0.2 884,253 + -2.0 884,253 + +0.2 885,179 + -0.3 885,179 + -1.1 885,179 + -1.8 885,180 - -1.4 885,492 + +1.0 885,492 + -1.5 885,496 + -1.7 885,496 + +0.6 885,513 - +0.9 885,513 - +0.3 885,517 - -1.1 885,517 - -0.0 885,517 - -0.4 885,544 + +0.6 885,643 - +0.5 885,808 - +0.4
Or see this region's nucleotide sequence