Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03540 and PS417_03545 overlap by 8 nucleotides PS417_03545 and PS417_03550 are separated by 6 nucleotides PS417_03550 and PS417_03555 are separated by 473 nucleotides
PS417_03540: PS417_03540 - type III secretion protein, at 808,118 to 808,675
_03540
PS417_03545: PS417_03545 - type III secretion protein, at 808,668 to 809,489
_03545
PS417_03550: PS417_03550 - hypothetical protein, at 809,496 to 809,858
_03550
PS417_03555: PS417_03555 - ATPase AAA, at 810,332 to 811,258
_03555
Position (kb) 809
810 Strain fitness (log2 ratio) -2
-1
0
1
2 at 808.499 kb on + strand, within PS417_03540 at 808.500 kb on - strand, within PS417_03540 at 808.524 kb on - strand, within PS417_03540 at 808.583 kb on + strand, within PS417_03540 at 808.583 kb on + strand, within PS417_03540 at 808.584 kb on - strand, within PS417_03540 at 808.584 kb on - strand, within PS417_03540 at 808.584 kb on - strand, within PS417_03540 at 808.585 kb on + strand, within PS417_03540 at 808.586 kb on - strand, within PS417_03540 at 808.586 kb on - strand, within PS417_03540 at 808.586 kb on - strand, within PS417_03540 at 808.596 kb on + strand, within PS417_03540 at 808.596 kb on + strand, within PS417_03540 at 808.596 kb on + strand, within PS417_03540 at 808.629 kb on + strand at 808.629 kb on + strand at 808.629 kb on + strand at 808.630 kb on - strand at 808.630 kb on - strand at 808.631 kb on + strand at 808.632 kb on - strand at 808.669 kb on + strand at 808.669 kb on + strand at 808.772 kb on + strand, within PS417_03545 at 808.773 kb on - strand, within PS417_03545 at 808.773 kb on - strand, within PS417_03545 at 808.773 kb on - strand, within PS417_03545 at 808.870 kb on + strand, within PS417_03545 at 808.894 kb on + strand, within PS417_03545 at 808.895 kb on - strand, within PS417_03545 at 809.018 kb on + strand at 809.164 kb on + strand, within PS417_03545 at 809.164 kb on + strand, within PS417_03545 at 809.164 kb on + strand, within PS417_03545 at 809.164 kb on + strand, within PS417_03545 at 809.164 kb on + strand, within PS417_03545 at 809.165 kb on - strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.168 kb on + strand, within PS417_03545 at 809.169 kb on - strand, within PS417_03545 at 809.170 kb on + strand, within PS417_03545 at 809.171 kb on - strand, within PS417_03545 at 809.234 kb on + strand, within PS417_03545 at 809.339 kb on + strand, within PS417_03545 at 809.374 kb on - strand, within PS417_03545 at 809.376 kb on + strand, within PS417_03545 at 809.401 kb on - strand, within PS417_03545 at 809.401 kb on - strand, within PS417_03545 at 809.429 kb on + strand at 809.457 kb on + strand at 809.457 kb on + strand at 809.457 kb on + strand at 809.458 kb on - strand at 809.458 kb on - strand at 809.458 kb on - strand at 809.655 kb on - strand, within PS417_03550 at 809.673 kb on + strand, within PS417_03550 at 809.717 kb on + strand, within PS417_03550 at 809.718 kb on - strand, within PS417_03550 at 809.828 kb on + strand at 809.829 kb on - strand at 810.029 kb on + strand at 810.168 kb on - strand at 810.168 kb on - strand at 810.187 kb on - strand at 810.192 kb on + strand at 810.294 kb on + strand at 810.294 kb on + strand at 810.295 kb on - strand at 810.295 kb on - strand at 810.311 kb on - strand at 810.424 kb on + strand at 810.494 kb on + strand, within PS417_03555 at 810.495 kb on - strand, within PS417_03555 at 810.542 kb on + strand, within PS417_03555 at 810.543 kb on - strand, within PS417_03555 at 810.688 kb on + strand, within PS417_03555 at 810.757 kb on - strand, within PS417_03555
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 808,499 + PS417_03540 0.68 +0.4 808,500 - PS417_03540 0.68 -0.8 808,524 - PS417_03540 0.73 -0.1 808,583 + PS417_03540 0.83 +0.3 808,583 + PS417_03540 0.83 +0.3 808,584 - PS417_03540 0.84 +1.4 808,584 - PS417_03540 0.84 +1.1 808,584 - PS417_03540 0.84 +0.8 808,585 + PS417_03540 0.84 +0.1 808,586 - PS417_03540 0.84 -0.2 808,586 - PS417_03540 0.84 +0.6 808,586 - PS417_03540 0.84 +0.7 808,596 + PS417_03540 0.86 -0.3 808,596 + PS417_03540 0.86 +0.6 808,596 + PS417_03540 0.86 -1.2 808,629 + -1.2 808,629 + +0.6 808,629 + -0.1 808,630 - -0.6 808,630 - +0.2 808,631 + -0.4 808,632 - +0.7 808,669 + +1.6 808,669 + -1.6 808,772 + PS417_03545 0.13 -0.2 808,773 - PS417_03545 0.13 -1.0 808,773 - PS417_03545 0.13 -0.4 808,773 - PS417_03545 0.13 -0.1 808,870 + PS417_03545 0.25 -1.0 808,894 + PS417_03545 0.27 -0.1 808,895 - PS417_03545 0.28 -1.2 809,018 + +0.6 809,164 + PS417_03545 0.60 +0.2 809,164 + PS417_03545 0.60 -1.6 809,164 + PS417_03545 0.60 -0.4 809,164 + PS417_03545 0.60 -1.1 809,164 + PS417_03545 0.60 +0.8 809,165 - PS417_03545 0.60 +0.7 809,168 + PS417_03545 0.61 -0.6 809,168 + PS417_03545 0.61 -0.7 809,168 + PS417_03545 0.61 -0.6 809,168 + PS417_03545 0.61 -1.7 809,168 + PS417_03545 0.61 +1.1 809,169 - PS417_03545 0.61 -0.7 809,170 + PS417_03545 0.61 +0.1 809,171 - PS417_03545 0.61 -1.3 809,234 + PS417_03545 0.69 +0.0 809,339 + PS417_03545 0.82 +0.1 809,374 - PS417_03545 0.86 -1.7 809,376 + PS417_03545 0.86 -0.8 809,401 - PS417_03545 0.89 -0.1 809,401 - PS417_03545 0.89 -0.9 809,429 + -0.6 809,457 + -0.4 809,457 + +0.4 809,457 + -0.3 809,458 - -2.1 809,458 - +0.1 809,458 - +0.4 809,655 - PS417_03550 0.44 -1.0 809,673 + PS417_03550 0.49 -0.1 809,717 + PS417_03550 0.61 +0.6 809,718 - PS417_03550 0.61 -1.6 809,828 + +0.0 809,829 - +0.8 810,029 + +1.8 810,168 - -0.7 810,168 - +0.6 810,187 - +1.6 810,192 + -0.1 810,294 + +1.1 810,294 + +0.3 810,295 - +0.5 810,295 - -0.7 810,311 - -0.6 810,424 + -0.2 810,494 + PS417_03555 0.17 +0.7 810,495 - PS417_03555 0.18 -1.4 810,542 + PS417_03555 0.23 -1.1 810,543 - PS417_03555 0.23 +2.5 810,688 + PS417_03555 0.38 +0.3 810,757 - PS417_03555 0.46 +0.2
Or see this region's nucleotide sequence