Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03505 and PS417_03510 are separated by 0 nucleotides PS417_03510 and PS417_03515 are separated by 11 nucleotides PS417_03515 and PS417_03520 overlap by 4 nucleotides
PS417_03505: PS417_03505 - type III secretion system protein, at 803,013 to 804,110
_03505
PS417_03510: PS417_03510 - type III secretion system negative regulatory protein RspV, at 804,111 to 804,449
_03510
PS417_03515: PS417_03515 - type III secretion protein, at 804,461 to 804,664
_03515
PS417_03520: PS417_03520 - secretin, at 804,661 to 806,802
_03520
Position (kb) 804
805 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 803.385 kb on - strand, within PS417_03505 at 803.385 kb on - strand, within PS417_03505 at 803.481 kb on + strand, within PS417_03505 at 803.481 kb on + strand, within PS417_03505 at 803.482 kb on - strand, within PS417_03505 at 803.482 kb on - strand, within PS417_03505 at 803.482 kb on - strand, within PS417_03505 at 803.488 kb on + strand, within PS417_03505 at 803.544 kb on + strand, within PS417_03505 at 803.544 kb on + strand, within PS417_03505 at 803.544 kb on + strand, within PS417_03505 at 803.545 kb on - strand, within PS417_03505 at 803.545 kb on - strand, within PS417_03505 at 803.545 kb on - strand, within PS417_03505 at 803.745 kb on + strand, within PS417_03505 at 803.842 kb on - strand, within PS417_03505 at 803.855 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.956 kb on + strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 803.957 kb on - strand, within PS417_03505 at 804.229 kb on + strand, within PS417_03510 at 804.230 kb on - strand, within PS417_03510 at 804.230 kb on - strand, within PS417_03510 at 804.233 kb on + strand, within PS417_03510 at 804.233 kb on + strand, within PS417_03510 at 804.605 kb on - strand, within PS417_03515 at 804.752 kb on - strand at 804.752 kb on - strand at 804.890 kb on + strand, within PS417_03520 at 805.137 kb on - strand, within PS417_03520 at 805.416 kb on + strand, within PS417_03520 at 805.416 kb on + strand, within PS417_03520 at 805.426 kb on + strand, within PS417_03520
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 803,385 - PS417_03505 0.34 -0.2 803,385 - PS417_03505 0.34 +0.2 803,481 + PS417_03505 0.43 -0.4 803,481 + PS417_03505 0.43 -0.9 803,482 - PS417_03505 0.43 +0.0 803,482 - PS417_03505 0.43 +0.8 803,482 - PS417_03505 0.43 +0.0 803,488 + PS417_03505 0.43 +0.4 803,544 + PS417_03505 0.48 -0.5 803,544 + PS417_03505 0.48 +0.0 803,544 + PS417_03505 0.48 +0.3 803,545 - PS417_03505 0.48 +0.3 803,545 - PS417_03505 0.48 -0.3 803,545 - PS417_03505 0.48 +0.5 803,745 + PS417_03505 0.67 +0.0 803,842 - PS417_03505 0.76 +2.5 803,855 + PS417_03505 0.77 +0.0 803,956 + PS417_03505 0.86 +0.2 803,956 + PS417_03505 0.86 +0.7 803,956 + PS417_03505 0.86 +0.4 803,957 - PS417_03505 0.86 +1.3 803,957 - PS417_03505 0.86 -0.0 803,957 - PS417_03505 0.86 +0.8 803,957 - PS417_03505 0.86 +0.2 804,229 + PS417_03510 0.35 -1.6 804,230 - PS417_03510 0.35 -0.0 804,230 - PS417_03510 0.35 -2.3 804,233 + PS417_03510 0.36 -1.7 804,233 + PS417_03510 0.36 -1.2 804,605 - PS417_03515 0.71 -1.0 804,752 - -1.2 804,752 - -1.0 804,890 + PS417_03520 0.11 +0.0 805,137 - PS417_03520 0.22 -0.8 805,416 + PS417_03520 0.35 -0.5 805,416 + PS417_03520 0.35 -0.1 805,426 + PS417_03520 0.36 +2.9
Or see this region's nucleotide sequence