Strain Fitness in Pseudomonas simiae WCS417 around PS417_00335

Experiment: P. simiae OR Antrim MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00325 and PS417_00330 overlap by 35 nucleotidesPS417_00330 and PS417_00335 are separated by 10 nucleotidesPS417_00335 and PS417_00340 overlap by 13 nucleotidesPS417_00340 and PS417_00345 overlap by 4 nucleotides PS417_00325: PS417_00325 - hypothetical protein, at 63,613 to 64,377 _00325 PS417_00330: PS417_00330 - hypothetical protein, at 64,343 to 64,927 _00330 PS417_00335: PS417_00335 - cytochrome B561, at 64,938 to 66,017 _00335 PS417_00340: PS417_00340 - protoheme IX farnesyltransferase, at 66,005 to 66,904 _00340 PS417_00345: PS417_00345 - copper-binding protein, at 66,901 to 67,536 _00345 Position (kb) 64 65 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 64.051 kb on + strand, within PS417_00325at 64.052 kb on - strand, within PS417_00325at 64.052 kb on - strand, within PS417_00325at 64.174 kb on + strand, within PS417_00325at 64.303 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.303 kb on + strandat 64.310 kb on - strandat 64.463 kb on + strand, within PS417_00330at 64.463 kb on + strandat 64.463 kb on + strand, within PS417_00330at 64.464 kb on - strand, within PS417_00330at 64.499 kb on + strand, within PS417_00330at 64.499 kb on + strand, within PS417_00330at 64.542 kb on + strand, within PS417_00330at 64.543 kb on - strand, within PS417_00330at 64.543 kb on - strand, within PS417_00330at 64.625 kb on + strand, within PS417_00330at 64.625 kb on + strand, within PS417_00330at 64.716 kb on - strand, within PS417_00330at 64.853 kb on + strand, within PS417_00330at 64.853 kb on + strand, within PS417_00330at 65.010 kb on + strandat 65.012 kb on + strandat 65.013 kb on - strandat 65.013 kb on - strandat 65.013 kb on - strandat 65.061 kb on + strand, within PS417_00335at 65.062 kb on - strand, within PS417_00335at 65.172 kb on + strand, within PS417_00335at 65.417 kb on - strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.603 kb on + strand, within PS417_00335at 65.604 kb on - strand, within PS417_00335at 65.604 kb on - strand, within PS417_00335at 65.625 kb on + strand, within PS417_00335at 65.625 kb on + strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.626 kb on - strand, within PS417_00335at 65.740 kb on + strand, within PS417_00335at 65.741 kb on - strand, within PS417_00335at 65.741 kb on - strand, within PS417_00335at 65.745 kb on - strand, within PS417_00335at 65.814 kb on + strand, within PS417_00335at 65.815 kb on - strand, within PS417_00335at 65.895 kb on + strand, within PS417_00335at 65.896 kb on - strand, within PS417_00335at 65.896 kb on - strand, within PS417_00335at 65.963 kb on + strandat 65.972 kb on - strandat 65.991 kb on - strandat 66.053 kb on + strandat 66.097 kb on + strand, within PS417_00340at 66.098 kb on - strand, within PS417_00340at 66.157 kb on - strand, within PS417_00340at 66.407 kb on + strand, within PS417_00340at 66.408 kb on - strand, within PS417_00340at 66.443 kb on - strand, within PS417_00340at 66.443 kb on - strand, within PS417_00340at 66.647 kb on + strand, within PS417_00340at 66.648 kb on - strand, within PS417_00340at 66.707 kb on + strand, within PS417_00340at 66.708 kb on - strand, within PS417_00340at 66.708 kb on - strand, within PS417_00340at 66.792 kb on - strand, within PS417_00340at 66.833 kb on + strandat 66.833 kb on + strandat 66.838 kb on + strandat 66.839 kb on - strandat 66.839 kb on - strandat 66.845 kb on + strandat 66.888 kb on - strandat 66.900 kb on + strandat 66.900 kb on + strandat 66.900 kb on + strandat 66.900 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
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64,051 + PS417_00325 0.57 +1.6
64,052 - PS417_00325 0.57 +1.6
64,052 - PS417_00325 0.57 +0.6
64,174 + PS417_00325 0.73 -1.4
64,303 + +0.5
64,303 + -0.3
64,303 + +1.4
64,303 + -0.7
64,310 - +0.5
64,463 + PS417_00330 0.21 -0.6
64,463 + +0.0
64,463 + PS417_00330 0.21 -1.0
64,464 - PS417_00330 0.21 -0.3
64,499 + PS417_00330 0.27 -0.4
64,499 + PS417_00330 0.27 +0.2
64,542 + PS417_00330 0.34 +0.2
64,543 - PS417_00330 0.34 +1.1
64,543 - PS417_00330 0.34 +1.0
64,625 + PS417_00330 0.48 -0.5
64,625 + PS417_00330 0.48 +1.1
64,716 - PS417_00330 0.64 -1.0
64,853 + PS417_00330 0.87 -1.2
64,853 + PS417_00330 0.87 -0.3
65,010 + -1.3
65,012 + -0.6
65,013 - +0.7
65,013 - -0.7
65,013 - -0.8
65,061 + PS417_00335 0.11 -1.0
65,062 - PS417_00335 0.11 -2.5
65,172 + PS417_00335 0.22 -0.8
65,417 - PS417_00335 0.44 +0.2
65,603 + PS417_00335 0.62 -0.2
65,603 + PS417_00335 0.62 -1.3
65,603 + PS417_00335 0.62 -1.6
65,603 + PS417_00335 0.62 -0.6
65,604 - PS417_00335 0.62 -1.0
65,604 - PS417_00335 0.62 +0.4
65,625 + PS417_00335 0.64 +1.0
65,625 + PS417_00335 0.64 -0.8
65,626 - PS417_00335 0.64 +0.3
65,626 - PS417_00335 0.64 -0.9
65,626 - PS417_00335 0.64 -0.5
65,740 + PS417_00335 0.74 +0.0
65,741 - PS417_00335 0.74 -0.3
65,741 - PS417_00335 0.74 +0.3
65,745 - PS417_00335 0.75 -0.6
65,814 + PS417_00335 0.81 +1.9
65,815 - PS417_00335 0.81 -0.4
65,895 + PS417_00335 0.89 -0.4
65,896 - PS417_00335 0.89 +0.3
65,896 - PS417_00335 0.89 -1.6
65,963 + +0.6
65,972 - +1.6
65,991 - -0.9
66,053 + -2.3
66,097 + PS417_00340 0.10 -1.0
66,098 - PS417_00340 0.10 -3.0
66,157 - PS417_00340 0.17 +0.0
66,407 + PS417_00340 0.45 +0.1
66,408 - PS417_00340 0.45 +1.2
66,443 - PS417_00340 0.49 +1.2
66,443 - PS417_00340 0.49 -0.1
66,647 + PS417_00340 0.71 -0.8
66,648 - PS417_00340 0.71 +1.5
66,707 + PS417_00340 0.78 +1.2
66,708 - PS417_00340 0.78 +0.3
66,708 - PS417_00340 0.78 -0.5
66,792 - PS417_00340 0.87 -1.4
66,833 + -1.0
66,833 + +0.9
66,838 + +0.8
66,839 - +1.2
66,839 - +0.5
66,845 + +0.2
66,888 - -0.0
66,900 + -0.6
66,900 + +1.7
66,900 + -1.0
66,900 + +0.2

Or see this region's nucleotide sequence