Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03280 and PS417_03285 overlap by 4 nucleotides PS417_03285 and PS417_03290 overlap by 11 nucleotides
PS417_03280: PS417_03280 - chromosome partitioning protein ParA, at 751,383 to 754,223
_03280
PS417_03285: PS417_03285 - chromosome partitioning protein, at 754,220 to 754,927
_03285
PS417_03290: PS417_03290 - hypothetical protein, at 754,917 to 756,194
_03290
Position (kb) 754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 753.514 kb on + strand, within PS417_03280 at 753.514 kb on + strand, within PS417_03280 at 753.514 kb on + strand, within PS417_03280 at 753.534 kb on + strand, within PS417_03280 at 753.535 kb on - strand, within PS417_03280 at 753.535 kb on - strand, within PS417_03280 at 753.746 kb on + strand, within PS417_03280 at 753.794 kb on - strand, within PS417_03280 at 753.988 kb on + strand at 753.988 kb on + strand at 753.988 kb on + strand at 753.989 kb on - strand at 754.036 kb on + strand at 754.036 kb on + strand at 754.106 kb on + strand at 754.126 kb on + strand at 754.126 kb on + strand at 754.127 kb on - strand at 754.378 kb on + strand, within PS417_03285 at 754.570 kb on - strand, within PS417_03285 at 754.743 kb on + strand, within PS417_03285 at 754.746 kb on + strand, within PS417_03285 at 754.747 kb on - strand, within PS417_03285 at 754.834 kb on - strand, within PS417_03285 at 754.934 kb on + strand at 755.273 kb on - strand, within PS417_03290 at 755.278 kb on + strand, within PS417_03290 at 755.278 kb on + strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.279 kb on - strand, within PS417_03290 at 755.860 kb on + strand, within PS417_03290 at 755.861 kb on - strand, within PS417_03290
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 753,514 + PS417_03280 0.75 +0.6 753,514 + PS417_03280 0.75 -1.2 753,514 + PS417_03280 0.75 -1.4 753,534 + PS417_03280 0.76 +0.4 753,535 - PS417_03280 0.76 +0.2 753,535 - PS417_03280 0.76 -0.2 753,746 + PS417_03280 0.83 -0.9 753,794 - PS417_03280 0.85 -2.8 753,988 + -1.0 753,988 + -1.7 753,988 + +0.6 753,989 - +1.6 754,036 + -1.3 754,036 + -0.3 754,106 + +0.4 754,126 + -0.8 754,126 + -1.3 754,127 - -2.1 754,378 + PS417_03285 0.22 -0.7 754,570 - PS417_03285 0.49 -1.2 754,743 + PS417_03285 0.74 -0.3 754,746 + PS417_03285 0.74 -0.7 754,747 - PS417_03285 0.74 -1.2 754,834 - PS417_03285 0.87 -0.8 754,934 + -1.2 755,273 - PS417_03290 0.28 -1.8 755,278 + PS417_03290 0.28 +0.1 755,278 + PS417_03290 0.28 -0.8 755,279 - PS417_03290 0.28 -0.7 755,279 - PS417_03290 0.28 -0.2 755,279 - PS417_03290 0.28 -0.8 755,279 - PS417_03290 0.28 -0.6 755,860 + PS417_03290 0.74 -1.4 755,861 - PS417_03290 0.74 -1.8
Or see this region's nucleotide sequence