Strain Fitness in Pseudomonas simiae WCS417 around PS417_03250

Experiment: P. simiae OR Antrim MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03245 and PS417_03250 are separated by 39 nucleotidesPS417_03250 and PS417_03255 are separated by 502 nucleotides PS417_03245: PS417_03245 - omega amino acid--pyruvate aminotransferase, at 741,039 to 742,388 _03245 PS417_03250: PS417_03250 - methylmalonate-semialdehyde dehydrogenase, at 742,428 to 743,924 _03250 PS417_03255: PS417_03255 - 23S ribosomal RNA, at 744,427 to 747,342 _03255 Position (kb) 742 743 744Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 741.439 kb on - strand, within PS417_03245at 741.439 kb on - strand, within PS417_03245at 741.448 kb on + strand, within PS417_03245at 741.548 kb on + strand, within PS417_03245at 741.549 kb on - strand, within PS417_03245at 741.549 kb on - strand, within PS417_03245at 741.549 kb on - strand, within PS417_03245at 741.593 kb on + strand, within PS417_03245at 741.593 kb on + strand, within PS417_03245at 741.593 kb on + strand, within PS417_03245at 741.594 kb on - strand, within PS417_03245at 741.594 kb on - strand, within PS417_03245at 741.594 kb on - strand, within PS417_03245at 741.806 kb on - strand, within PS417_03245at 741.806 kb on - strand, within PS417_03245at 741.960 kb on + strand, within PS417_03245at 741.961 kb on - strand, within PS417_03245at 741.961 kb on - strand, within PS417_03245at 741.993 kb on + strand, within PS417_03245at 742.023 kb on + strand, within PS417_03245at 742.023 kb on + strand, within PS417_03245at 742.024 kb on - strand, within PS417_03245at 742.179 kb on + strand, within PS417_03245at 742.276 kb on - strandat 742.276 kb on - strandat 742.399 kb on + strandat 742.399 kb on + strandat 742.400 kb on - strandat 742.400 kb on - strandat 742.400 kb on - strandat 742.401 kb on + strandat 742.402 kb on - strandat 742.402 kb on - strandat 742.403 kb on + strandat 742.403 kb on + strandat 742.404 kb on - strandat 742.404 kb on - strandat 742.404 kb on - strandat 742.494 kb on + strandat 742.494 kb on + strandat 742.494 kb on + strandat 742.494 kb on + strandat 742.495 kb on - strandat 742.495 kb on - strandat 742.670 kb on + strand, within PS417_03250at 742.671 kb on - strand, within PS417_03250at 742.756 kb on - strand, within PS417_03250at 742.849 kb on + strand, within PS417_03250at 742.850 kb on - strand, within PS417_03250at 742.850 kb on - strand, within PS417_03250at 742.850 kb on - strand, within PS417_03250at 742.859 kb on + strand, within PS417_03250at 742.859 kb on + strand, within PS417_03250at 742.862 kb on + strand, within PS417_03250at 742.863 kb on - strand, within PS417_03250at 742.863 kb on - strand, within PS417_03250at 742.902 kb on + strand, within PS417_03250at 742.902 kb on + strand, within PS417_03250at 742.903 kb on - strand, within PS417_03250at 742.903 kb on - strand, within PS417_03250at 743.018 kb on - strand, within PS417_03250at 743.018 kb on - strand, within PS417_03250at 743.118 kb on + strand, within PS417_03250at 743.118 kb on + strand, within PS417_03250at 743.124 kb on + strand, within PS417_03250at 743.125 kb on - strand, within PS417_03250at 743.125 kb on - strand, within PS417_03250at 743.244 kb on + strand, within PS417_03250at 743.245 kb on - strand, within PS417_03250at 743.245 kb on - strand, within PS417_03250at 743.430 kb on + strand, within PS417_03250at 743.430 kb on + strand, within PS417_03250at 743.430 kb on + strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.431 kb on - strand, within PS417_03250at 743.432 kb on + strand, within PS417_03250at 743.432 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.434 kb on + strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.435 kb on - strand, within PS417_03250at 743.562 kb on + strand, within PS417_03250at 743.562 kb on + strand, within PS417_03250at 743.563 kb on - strand, within PS417_03250at 743.672 kb on + strand, within PS417_03250at 743.814 kb on + strandat 743.838 kb on + strandat 743.838 kb on + strandat 743.838 kb on + strandat 743.838 kb on + strandat 743.912 kb on + strandat 743.913 kb on - strandat 743.922 kb on + strandat 743.923 kb on - strandat 743.923 kb on - strandat 743.931 kb on + strandat 743.931 kb on + strandat 743.932 kb on - strandat 743.996 kb on + strandat 744.034 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
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741,439 - PS417_03245 0.30 -2.2
741,439 - PS417_03245 0.30 -0.2
741,448 + PS417_03245 0.30 -0.3
741,548 + PS417_03245 0.38 -0.9
741,549 - PS417_03245 0.38 -1.0
741,549 - PS417_03245 0.38 +0.3
741,549 - PS417_03245 0.38 +0.5
741,593 + PS417_03245 0.41 +1.6
741,593 + PS417_03245 0.41 -0.4
741,593 + PS417_03245 0.41 +1.6
741,594 - PS417_03245 0.41 -1.3
741,594 - PS417_03245 0.41 -0.1
741,594 - PS417_03245 0.41 -3.1
741,806 - PS417_03245 0.57 -0.6
741,806 - PS417_03245 0.57 +0.6
741,960 + PS417_03245 0.68 +0.6
741,961 - PS417_03245 0.68 -0.3
741,961 - PS417_03245 0.68 -0.0
741,993 + PS417_03245 0.71 -0.8
742,023 + PS417_03245 0.73 -1.0
742,023 + PS417_03245 0.73 +0.3
742,024 - PS417_03245 0.73 -0.5
742,179 + PS417_03245 0.84 -1.0
742,276 - -1.6
742,276 - +1.0
742,399 + -0.0
742,399 + -0.8
742,400 - +0.2
742,400 - -1.0
742,400 - +0.5
742,401 + -1.3
742,402 - +0.6
742,402 - -1.5
742,403 + -0.2
742,403 + -0.1
742,404 - -0.4
742,404 - +0.8
742,404 - +0.4
742,494 + +0.8
742,494 + +0.7
742,494 + -0.2
742,494 + -1.2
742,495 - +1.6
742,495 - -0.7
742,670 + PS417_03250 0.16 -1.7
742,671 - PS417_03250 0.16 -0.4
742,756 - PS417_03250 0.22 +0.8
742,849 + PS417_03250 0.28 +0.8
742,850 - PS417_03250 0.28 +0.1
742,850 - PS417_03250 0.28 +1.2
742,850 - PS417_03250 0.28 +1.1
742,859 + PS417_03250 0.29 -0.4
742,859 + PS417_03250 0.29 +0.1
742,862 + PS417_03250 0.29 -3.0
742,863 - PS417_03250 0.29 -2.5
742,863 - PS417_03250 0.29 -0.7
742,902 + PS417_03250 0.32 +0.5
742,902 + PS417_03250 0.32 -0.0
742,903 - PS417_03250 0.32 -0.4
742,903 - PS417_03250 0.32 +0.3
743,018 - PS417_03250 0.39 -0.9
743,018 - PS417_03250 0.39 +0.3
743,118 + PS417_03250 0.46 +0.1
743,118 + PS417_03250 0.46 -0.4
743,124 + PS417_03250 0.46 -0.4
743,125 - PS417_03250 0.47 -0.9
743,125 - PS417_03250 0.47 +1.6
743,244 + PS417_03250 0.55 -0.3
743,245 - PS417_03250 0.55 +1.1
743,245 - PS417_03250 0.55 -2.1
743,430 + PS417_03250 0.67 -0.9
743,430 + PS417_03250 0.67 -0.7
743,430 + PS417_03250 0.67 -0.4
743,431 - PS417_03250 0.67 +0.7
743,431 - PS417_03250 0.67 -0.0
743,431 - PS417_03250 0.67 +0.8
743,431 - PS417_03250 0.67 +0.4
743,431 - PS417_03250 0.67 +2.1
743,432 + PS417_03250 0.67 -1.2
743,432 + PS417_03250 0.67 +0.3
743,434 + PS417_03250 0.67 +0.8
743,434 + PS417_03250 0.67 -0.6
743,434 + PS417_03250 0.67 +1.3
743,434 + PS417_03250 0.67 +0.6
743,434 + PS417_03250 0.67 -0.0
743,434 + PS417_03250 0.67 -0.7
743,435 - PS417_03250 0.67 +0.8
743,435 - PS417_03250 0.67 +0.1
743,435 - PS417_03250 0.67 +0.6
743,435 - PS417_03250 0.67 +2.4
743,435 - PS417_03250 0.67 -1.0
743,562 + PS417_03250 0.76 +1.2
743,562 + PS417_03250 0.76 -0.3
743,563 - PS417_03250 0.76 +0.0
743,672 + PS417_03250 0.83 +1.3
743,814 + -1.4
743,838 + -2.8
743,838 + +1.1
743,838 + +0.6
743,838 + -1.7
743,912 + -0.9
743,913 - +1.1
743,922 + -1.0
743,923 - -0.0
743,923 - +0.0
743,931 + -1.2
743,931 + +1.8
743,932 - +0.5
743,996 + -0.1
744,034 - -0.2

Or see this region's nucleotide sequence