Strain Fitness in Pseudomonas simiae WCS417 around PS417_00305

Experiment: P. simiae OR Antrim MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00300 and PS417_00305 are separated by 58 nucleotidesPS417_00305 and PS417_00310 are separated by 21 nucleotidesPS417_00310 and PS417_00315 are separated by 35 nucleotides PS417_00300: PS417_00300 - cytochrome B559 subunit alpha, at 59,106 to 60,233 _00300 PS417_00305: PS417_00305 - cytochrome oxidase subunit I, at 60,292 to 61,878 _00305 PS417_00310: PS417_00310 - cysteine synthase, at 61,900 to 62,451 _00310 PS417_00315: PS417_00315 - MFS transporter, at 62,487 to 63,374 _00315 Position (kb) 60 61 62Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 59.439 kb on + strand, within PS417_00300at 59.439 kb on + strand, within PS417_00300at 59.440 kb on - strand, within PS417_00300at 59.499 kb on + strand, within PS417_00300at 59.505 kb on + strand, within PS417_00300at 59.505 kb on + strand, within PS417_00300at 59.505 kb on + strand, within PS417_00300at 59.589 kb on + strand, within PS417_00300at 59.589 kb on + strand, within PS417_00300at 59.590 kb on - strand, within PS417_00300at 59.590 kb on - strand, within PS417_00300at 59.764 kb on - strand, within PS417_00300at 59.764 kb on - strand, within PS417_00300at 59.764 kb on - strand, within PS417_00300at 59.764 kb on - strand, within PS417_00300at 59.904 kb on - strand, within PS417_00300at 59.949 kb on + strand, within PS417_00300at 59.949 kb on + strand, within PS417_00300at 59.950 kb on - strand, within PS417_00300at 60.147 kb on + strandat 60.147 kb on + strandat 60.194 kb on + strandat 60.236 kb on + strandat 60.237 kb on - strandat 60.400 kb on + strandat 60.730 kb on + strand, within PS417_00305at 60.731 kb on - strand, within PS417_00305at 60.731 kb on - strand, within PS417_00305at 60.751 kb on + strand, within PS417_00305at 60.751 kb on + strand, within PS417_00305at 60.752 kb on - strand, within PS417_00305at 60.752 kb on - strand, within PS417_00305at 61.069 kb on + strand, within PS417_00305at 61.069 kb on + strand, within PS417_00305at 61.069 kb on + strand, within PS417_00305at 61.070 kb on - strand, within PS417_00305at 61.070 kb on - strand, within PS417_00305at 61.070 kb on - strand, within PS417_00305at 61.255 kb on + strand, within PS417_00305at 61.255 kb on + strand, within PS417_00305at 61.255 kb on + strand, within PS417_00305at 61.255 kb on + strandat 61.256 kb on - strand, within PS417_00305at 61.256 kb on - strand, within PS417_00305at 61.447 kb on + strand, within PS417_00305at 61.448 kb on - strand, within PS417_00305at 61.471 kb on + strand, within PS417_00305at 61.472 kb on - strand, within PS417_00305at 61.475 kb on + strand, within PS417_00305at 61.475 kb on + strand, within PS417_00305at 61.517 kb on - strand, within PS417_00305at 61.519 kb on + strand, within PS417_00305at 61.520 kb on - strand, within PS417_00305at 61.549 kb on + strand, within PS417_00305at 61.550 kb on - strand, within PS417_00305at 61.663 kb on + strand, within PS417_00305at 61.994 kb on - strand, within PS417_00310at 61.994 kb on - strand, within PS417_00310at 62.151 kb on - strand, within PS417_00310at 62.238 kb on + strand, within PS417_00310at 62.239 kb on - strand, within PS417_00310at 62.239 kb on - strand, within PS417_00310at 62.264 kb on - strand, within PS417_00310at 62.264 kb on - strand, within PS417_00310at 62.264 kb on - strand, within PS417_00310at 62.344 kb on - strand, within PS417_00310at 62.449 kb on + strandat 62.453 kb on + strandat 62.505 kb on + strandat 62.505 kb on + strandat 62.505 kb on + strandat 62.506 kb on - strandat 62.508 kb on + strandat 62.537 kb on - strandat 62.537 kb on - strandat 62.537 kb on - strandat 62.661 kb on + strand, within PS417_00315at 62.816 kb on - strand, within PS417_00315

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
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59,439 + PS417_00300 0.30 +1.1
59,439 + PS417_00300 0.30 +2.0
59,440 - PS417_00300 0.30 -1.1
59,499 + PS417_00300 0.35 +0.5
59,505 + PS417_00300 0.35 +0.3
59,505 + PS417_00300 0.35 -0.6
59,505 + PS417_00300 0.35 +1.8
59,589 + PS417_00300 0.43 +1.2
59,589 + PS417_00300 0.43 -0.1
59,590 - PS417_00300 0.43 +0.1
59,590 - PS417_00300 0.43 -0.4
59,764 - PS417_00300 0.58 -0.6
59,764 - PS417_00300 0.58 +0.0
59,764 - PS417_00300 0.58 -1.8
59,764 - PS417_00300 0.58 +0.7
59,904 - PS417_00300 0.71 -1.7
59,949 + PS417_00300 0.75 +0.2
59,949 + PS417_00300 0.75 -2.2
59,950 - PS417_00300 0.75 -0.9
60,147 + +0.0
60,147 + +0.3
60,194 + +0.7
60,236 + -0.4
60,237 - +0.3
60,400 + -0.2
60,730 + PS417_00305 0.28 +2.0
60,731 - PS417_00305 0.28 +1.2
60,731 - PS417_00305 0.28 -0.2
60,751 + PS417_00305 0.29 -0.1
60,751 + PS417_00305 0.29 +2.1
60,752 - PS417_00305 0.29 -0.2
60,752 - PS417_00305 0.29 +0.4
61,069 + PS417_00305 0.49 +1.1
61,069 + PS417_00305 0.49 +0.1
61,069 + PS417_00305 0.49 -0.5
61,070 - PS417_00305 0.49 -1.1
61,070 - PS417_00305 0.49 +0.8
61,070 - PS417_00305 0.49 +0.1
61,255 + PS417_00305 0.61 -3.4
61,255 + PS417_00305 0.61 +0.5
61,255 + PS417_00305 0.61 -0.0
61,255 + +2.6
61,256 - PS417_00305 0.61 +1.2
61,256 - PS417_00305 0.61 +0.2
61,447 + PS417_00305 0.73 +0.4
61,448 - PS417_00305 0.73 +3.1
61,471 + PS417_00305 0.74 +2.0
61,472 - PS417_00305 0.74 -0.1
61,475 + PS417_00305 0.75 -0.2
61,475 + PS417_00305 0.75 -1.4
61,517 - PS417_00305 0.77 -0.2
61,519 + PS417_00305 0.77 -1.7
61,520 - PS417_00305 0.77 +0.2
61,549 + PS417_00305 0.79 -1.4
61,550 - PS417_00305 0.79 -1.4
61,663 + PS417_00305 0.86 +0.9
61,994 - PS417_00310 0.17 +0.8
61,994 - PS417_00310 0.17 +0.5
62,151 - PS417_00310 0.45 -0.5
62,238 + PS417_00310 0.61 -2.0
62,239 - PS417_00310 0.61 +1.4
62,239 - PS417_00310 0.61 -0.8
62,264 - PS417_00310 0.66 -0.6
62,264 - PS417_00310 0.66 -1.0
62,264 - PS417_00310 0.66 +1.0
62,344 - PS417_00310 0.80 -0.7
62,449 + -0.5
62,453 + -0.8
62,505 + +1.4
62,505 + +0.0
62,505 + -0.4
62,506 - -0.6
62,508 + +1.2
62,537 - +0.4
62,537 - +0.3
62,537 - -0.6
62,661 + PS417_00315 0.20 -2.5
62,816 - PS417_00315 0.37 -0.7

Or see this region's nucleotide sequence