Strain Fitness in Pseudomonas simiae WCS417 around PS417_27845

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
6,001,666	+				+1.0
6,001,667	-				+2.1
6,001,836	-		PS417_27840	0.25	-2.9
6,001,858	-		PS417_27840	0.28	-0.5
6,001,860	+		PS417_27840	0.28	-0.3
6,001,861	-		PS417_27840	0.28	+0.3
6,002,076	+		PS417_27840	0.57	-0.1
6,002,077	-		PS417_27840	0.57	-0.9
6,002,085	+		PS417_27840	0.58	-0.7
6,002,086	-		PS417_27840	0.59	-0.0
6,002,086	-		PS417_27840	0.59	+0.8
6,002,137	+		PS417_27840	0.65	-1.1
6,002,138	-		PS417_27840	0.66	+0.3
6,002,138	-		PS417_27840	0.66	-1.0
6,002,391	+				-1.5
6,002,391	+				+0.1
6,002,391	+				-0.3
6,002,392	-				+0.8
6,002,392	-				-0.9
6,002,589	+				-1.1
6,002,724	-		PS417_27845	0.24	+0.7
6,002,724	-		PS417_27845	0.24	+1.3
6,002,732	+		PS417_27845	0.25	+0.5
6,002,733	-		PS417_27845	0.25	+1.4
6,002,752	+		PS417_27845	0.27	+0.4
6,002,813	+		PS417_27845	0.35	+1.1
6,002,814	-		PS417_27845	0.35	+0.5
6,002,815	+		PS417_27845	0.35	+0.1
6,002,815	+		PS417_27845	0.35	-2.4
6,002,815	+		PS417_27845	0.35	-0.0
6,002,815	+		PS417_27845	0.35	+0.4
6,002,816	-		PS417_27845	0.35	-1.0
6,002,816	-		PS417_27845	0.35	+1.2
6,002,816	-		PS417_27845	0.35	-0.3
6,002,816	-		PS417_27845	0.35	+0.0
6,002,885	+		PS417_27845	0.43	-1.2
6,002,886	-		PS417_27845	0.43	+0.5
6,002,886	-		PS417_27845	0.43	-1.7
6,003,044	-		PS417_27845	0.62	+0.4
6,003,112	+		PS417_27845	0.70	+1.3
6,003,112	+		PS417_27845	0.70	+2.1
6,003,113	-		PS417_27845	0.70	+1.2
6,003,113	-		PS417_27845	0.70	+0.3
6,003,116	+		PS417_27845	0.70	+0.2
6,003,325	-				+3.3
6,003,328	+				+1.1
6,003,328	+				+0.1
6,003,328	+				+1.4
6,003,328	+				-0.1
6,003,328	+				+0.6
6,003,328	+				+0.5
6,003,329	-				-0.4
6,003,329	-				+0.7
6,003,329	-				-0.1
6,003,397	-				+1.1