Strain Fitness in Pseudomonas simiae WCS417 around PS417_27770
Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | P. simiae OR Antrim MOI 1 |
|---|---|---|---|---|---|
| remove | |||||
| 5,987,993 | + | PS417_27765 | 0.41 | +0.5 | |
| 5,988,012 | - | PS417_27765 | 0.42 | +0.1 | |
| 5,988,295 | - | PS417_27765 | 0.60 | +0.4 | |
| 5,988,295 | - | PS417_27765 | 0.60 | -0.1 | |
| 5,988,350 | + | PS417_27765 | 0.64 | -0.6 | |
| 5,988,350 | + | PS417_27765 | 0.64 | +1.3 | |
| 5,988,464 | - | PS417_27765 | 0.71 | +0.1 | |
| 5,988,763 | - | PS417_27765 | 0.90 | +0.9 | |
| 5,988,770 | - | -1.0 | |||
| 5,989,140 | + | PS417_27770 | 0.27 | +1.3 | |
| 5,989,173 | + | PS417_27770 | 0.32 | +0.6 | |
| 5,989,173 | + | PS417_27770 | 0.32 | +0.6 | |
| 5,989,625 | - | -0.0 |
Or see this region's nucleotide sequence