Strain Fitness in Pseudomonas simiae WCS417 around PS417_27190

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
5,868,974	-		PS417_27185	0.56	-0.3
5,869,141	+		PS417_27185	0.68	+2.0
5,869,142	-		PS417_27185	0.68	+0.8
5,869,379	-		PS417_27185	0.85	-0.9
5,869,379	-		PS417_27185	0.85	+0.9
5,869,381	-		PS417_27185	0.85	+0.9
5,869,496	-				-0.3
5,869,496	-				-0.1
5,869,581	+				+0.1
5,869,582	-				-0.3
5,869,608	+				-1.0
5,869,666	+				+0.3
5,869,667	-				-0.7
5,869,673	+				-1.1
5,869,674	-				-0.3
5,869,695	+				-0.0
5,869,695	+				+0.4
5,869,695	+				-1.2
5,869,696	-				+0.8
5,869,696	-				+1.7
5,869,696	-				-0.8
5,869,696	-				+1.9
5,869,701	+				-0.3
5,869,701	+				+0.3
5,869,702	-				-1.1
5,869,702	-				+0.4
5,869,705	-				+0.7
5,869,705	-				+0.4
5,869,705	-				-1.8
5,869,917	+				-1.0
5,869,917	+				-0.2
5,869,917	+				-0.1
5,869,917	+				+0.1
5,869,917	+				+1.6
5,869,917	+				-0.6
5,869,918	-				-1.7
5,869,918	-				+0.3
5,869,918	-				-1.7
5,869,918	-				+1.3
5,869,918	-				+0.0
5,869,918	-				-0.3
5,869,918	-				+1.1
5,869,918	-				-0.2
5,869,918	-				-0.3
5,869,918	-				-0.6
5,870,000	-				-0.2
5,870,033	-				-0.1
5,870,033	-				-0.7
5,870,230	+		PS417_27190	0.28	-0.8
5,870,230	+		PS417_27190	0.28	-0.3
5,870,230	+				+1.7
5,870,230	+		PS417_27190	0.28	+0.3
5,870,231	-		PS417_27190	0.28	-0.5
5,870,267	+		PS417_27190	0.32	+0.4
5,870,268	-		PS417_27190	0.32	-0.5
5,870,623	+		PS417_27190	0.68	+1.3
5,870,624	-		PS417_27190	0.68	-2.1
5,870,624	-		PS417_27190	0.68	-1.2
5,870,645	+		PS417_27190	0.70	-0.5
5,870,667	+		PS417_27190	0.73	-0.2
5,870,816	+		PS417_27190	0.88	-0.3
5,870,816	+		PS417_27190	0.88	-0.4
5,870,925	-				-0.7
5,870,925	-				+0.9
5,870,925	-				+0.9
5,870,925	-				-0.4
5,871,051	+				-0.1
5,871,051	+				+0.0
5,871,051	+				+0.7
5,871,055	+				-1.9
5,871,055	+				-0.4