Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26835 and PS417_26840 are separated by 33 nucleotides PS417_26840 and PS417_26845 are separated by 146 nucleotides PS417_26845 and PS417_26850 are separated by 28 nucleotides PS417_26850 and PS417_26855 are separated by 85 nucleotides
PS417_26835: PS417_26835 - 3-mercaptopyruvate sulfurtransferase, at 5,794,632 to 5,795,495
_26835
PS417_26840: PS417_26840 - TetR family transcriptional regulator, at 5,795,529 to 5,796,200
_26840
PS417_26845: PS417_26845 - coniferyl aldehyde dehydrogenase, at 5,796,347 to 5,797,774
_26845
PS417_26850: PS417_26850 - twin-arginine translocation pathway signal protein, at 5,797,803 to 5,798,348
_26850
PS417_26855: PS417_26855 - GMC family oxidoreductase, at 5,798,434 to 5,800,029
_26855
Position (kb) 5796
5797
5798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5795.506 kb on + strand at 5795.530 kb on + strand at 5795.531 kb on - strand at 5795.580 kb on + strand at 5795.581 kb on - strand at 5795.645 kb on - strand, within PS417_26840 at 5795.806 kb on + strand, within PS417_26840 at 5795.807 kb on - strand, within PS417_26840 at 5795.807 kb on - strand, within PS417_26840 at 5796.019 kb on + strand, within PS417_26840 at 5796.019 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.067 kb on + strand, within PS417_26840 at 5796.187 kb on - strand at 5796.218 kb on - strand at 5796.218 kb on - strand at 5796.258 kb on - strand at 5796.275 kb on + strand at 5796.275 kb on + strand at 5796.294 kb on - strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.325 kb on + strand at 5796.326 kb on - strand at 5796.328 kb on - strand at 5796.366 kb on - strand at 5796.366 kb on - strand at 5796.606 kb on - strand, within PS417_26845 at 5796.606 kb on - strand, within PS417_26845 at 5796.692 kb on + strand, within PS417_26845 at 5796.693 kb on - strand, within PS417_26845 at 5796.693 kb on - strand, within PS417_26845 at 5796.693 kb on - strand, within PS417_26845 at 5797.094 kb on - strand, within PS417_26845 at 5797.133 kb on + strand, within PS417_26845 at 5797.134 kb on - strand, within PS417_26845 at 5797.275 kb on - strand, within PS417_26845 at 5797.319 kb on + strand, within PS417_26845 at 5797.356 kb on + strand, within PS417_26845 at 5797.457 kb on + strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.458 kb on - strand, within PS417_26845 at 5797.490 kb on + strand, within PS417_26845 at 5797.491 kb on - strand, within PS417_26845 at 5797.493 kb on + strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.494 kb on - strand, within PS417_26845 at 5797.959 kb on - strand, within PS417_26850 at 5798.346 kb on + strand at 5798.412 kb on - strand at 5798.665 kb on + strand, within PS417_26855 at 5798.665 kb on + strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855 at 5798.666 kb on - strand, within PS417_26855
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,795,506 + +0.7 5,795,530 + +0.3 5,795,531 - +0.5 5,795,580 + +0.1 5,795,581 - -0.4 5,795,645 - PS417_26840 0.17 -2.1 5,795,806 + PS417_26840 0.41 +0.8 5,795,807 - PS417_26840 0.41 -0.7 5,795,807 - PS417_26840 0.41 -1.7 5,796,019 + PS417_26840 0.73 +1.0 5,796,019 + PS417_26840 0.73 +0.3 5,796,067 + PS417_26840 0.80 -2.5 5,796,067 + PS417_26840 0.80 -1.6 5,796,067 + PS417_26840 0.80 +0.1 5,796,187 - -0.8 5,796,218 - +0.6 5,796,218 - -0.8 5,796,258 - +0.6 5,796,275 + -1.2 5,796,275 + -0.0 5,796,294 - -0.7 5,796,325 + -1.4 5,796,325 + +0.5 5,796,325 + -1.2 5,796,325 + -0.2 5,796,325 + +0.5 5,796,326 - +0.5 5,796,328 - +0.6 5,796,366 - -0.9 5,796,366 - +2.6 5,796,606 - PS417_26845 0.18 +0.0 5,796,606 - PS417_26845 0.18 -0.1 5,796,692 + PS417_26845 0.24 +0.3 5,796,693 - PS417_26845 0.24 +1.6 5,796,693 - PS417_26845 0.24 -0.2 5,796,693 - PS417_26845 0.24 -0.6 5,797,094 - PS417_26845 0.52 +2.5 5,797,133 + PS417_26845 0.55 -0.1 5,797,134 - PS417_26845 0.55 -1.2 5,797,275 - PS417_26845 0.65 +0.3 5,797,319 + PS417_26845 0.68 -2.5 5,797,356 + PS417_26845 0.71 +2.3 5,797,457 + PS417_26845 0.78 -1.4 5,797,458 - PS417_26845 0.78 -1.2 5,797,458 - PS417_26845 0.78 -0.8 5,797,458 - PS417_26845 0.78 +1.0 5,797,490 + PS417_26845 0.80 -1.0 5,797,491 - PS417_26845 0.80 -1.0 5,797,493 + PS417_26845 0.80 -0.2 5,797,494 - PS417_26845 0.80 +1.1 5,797,494 - PS417_26845 0.80 +0.5 5,797,494 - PS417_26845 0.80 +0.9 5,797,494 - PS417_26845 0.80 +0.2 5,797,959 - PS417_26850 0.29 -1.7 5,798,346 + -1.2 5,798,412 - +0.6 5,798,665 + PS417_26855 0.14 -0.7 5,798,665 + PS417_26855 0.14 +0.4 5,798,666 - PS417_26855 0.15 -1.9 5,798,666 - PS417_26855 0.15 -2.9 5,798,666 - PS417_26855 0.15 -0.9
Or see this region's nucleotide sequence