Strain Fitness in Pseudomonas simiae WCS417 around PS417_26815
Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | P. simiae OR Antrim MOI 1 |
|---|---|---|---|---|---|
| remove | |||||
| 5,789,921 | - | +3.0 | |||
| 5,789,965 | - | -0.3 | |||
| 5,790,029 | - | +1.6 | |||
| 5,790,261 | - | PS417_26815 | 0.13 | -0.7 | |
| 5,790,432 | - | PS417_26815 | 0.25 | +0.6 | |
| 5,790,786 | - | PS417_26815 | 0.51 | -0.8 | |
| 5,790,992 | + | +1.6 | |||
| 5,791,270 | + | PS417_26815 | 0.87 | -1.0 | |
| 5,791,382 | + | +0.1 | |||
| 5,791,383 | - | -0.9 | |||
| 5,791,383 | - | -0.2 | |||
| 5,791,807 | + | PS417_26820 | 0.25 | -0.7 | |
| 5,791,807 | + | PS417_26820 | 0.25 | -0.3 | |
| 5,791,807 | + | PS417_26820 | 0.25 | +0.8 | |
| 5,791,808 | - | PS417_26820 | 0.25 | -0.0 | |
| 5,791,808 | - | PS417_26820 | 0.25 | +0.6 | |
| 5,791,911 | - | PS417_26820 | 0.32 | -1.4 | |
| 5,791,929 | - | PS417_26820 | 0.33 | -0.7 | |
| 5,792,167 | - | PS417_26820 | 0.49 | +0.6 | |
| 5,792,258 | + | PS417_26820 | 0.55 | +0.2 | |
| 5,792,388 | + | PS417_26820 | 0.64 | -1.1 | |
| 5,792,389 | - | PS417_26820 | 0.64 | -0.4 | |
| 5,792,389 | - | PS417_26820 | 0.64 | -0.0 |
Or see this region's nucleotide sequence