Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26475 and PS417_26480 are separated by 88 nucleotides PS417_26480 and PS417_26485 are separated by 191 nucleotides PS417_26485 and PS417_26490 overlap by 7 nucleotides PS417_26490 and PS417_26495 are separated by 71 nucleotides
PS417_26475: PS417_26475 - transglycosylase, at 5,725,138 to 5,726,322
_26475
PS417_26480: PS417_26480 - membrane protein, at 5,726,411 to 5,726,797
_26480
PS417_26485: PS417_26485 - sodium:proton antiporter, at 5,726,989 to 5,728,248
_26485
PS417_26490: PS417_26490 - membrane protein, at 5,728,242 to 5,729,129
_26490
PS417_26495: PS417_26495 - type III secretion system effector protein exou, at 5,729,201 to 5,731,132
_26495
Position (kb) 5726
5727
5728
5729 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5726.215 kb on - strand at 5726.345 kb on + strand at 5726.346 kb on - strand at 5726.413 kb on - strand at 5726.413 kb on - strand at 5726.421 kb on - strand at 5726.497 kb on - strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.509 kb on - strand, within PS417_26480 at 5726.509 kb on - strand, within PS417_26480 at 5726.527 kb on + strand, within PS417_26480 at 5726.528 kb on - strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.752 kb on - strand, within PS417_26480 at 5726.813 kb on + strand at 5726.814 kb on - strand at 5726.820 kb on - strand at 5726.838 kb on + strand at 5726.839 kb on - strand at 5726.897 kb on + strand at 5726.898 kb on - strand at 5727.037 kb on + strand at 5727.038 kb on - strand at 5727.038 kb on - strand at 5727.245 kb on + strand, within PS417_26485 at 5727.246 kb on - strand, within PS417_26485 at 5727.340 kb on + strand, within PS417_26485 at 5727.343 kb on + strand, within PS417_26485 at 5727.343 kb on + strand, within PS417_26485 at 5727.344 kb on - strand, within PS417_26485 at 5727.344 kb on - strand, within PS417_26485 at 5727.440 kb on + strand, within PS417_26485 at 5727.591 kb on - strand, within PS417_26485 at 5727.650 kb on - strand, within PS417_26485 at 5727.833 kb on - strand, within PS417_26485 at 5728.144 kb on + strand at 5728.145 kb on - strand at 5728.346 kb on + strand, within PS417_26490 at 5728.347 kb on - strand, within PS417_26490 at 5728.364 kb on + strand, within PS417_26490 at 5728.365 kb on - strand, within PS417_26490 at 5728.495 kb on + strand, within PS417_26490 at 5728.496 kb on - strand, within PS417_26490 at 5728.514 kb on + strand, within PS417_26490 at 5728.515 kb on - strand, within PS417_26490 at 5728.515 kb on - strand, within PS417_26490 at 5728.690 kb on + strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.865 kb on - strand, within PS417_26490 at 5729.158 kb on - strand at 5729.161 kb on + strand at 5729.162 kb on - strand at 5729.202 kb on + strand at 5729.202 kb on + strand at 5729.202 kb on + strand at 5729.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,726,215 - -0.7 5,726,345 + +2.5 5,726,346 - +2.4 5,726,413 - -0.6 5,726,413 - -0.6 5,726,421 - +0.8 5,726,497 - PS417_26480 0.22 +1.7 5,726,508 + PS417_26480 0.25 +1.6 5,726,508 + PS417_26480 0.25 -0.5 5,726,508 + PS417_26480 0.25 +0.5 5,726,508 + PS417_26480 0.25 -0.3 5,726,508 + PS417_26480 0.25 +1.2 5,726,509 - PS417_26480 0.25 +0.7 5,726,509 - PS417_26480 0.25 -1.3 5,726,527 + PS417_26480 0.30 -1.7 5,726,528 - PS417_26480 0.30 +0.2 5,726,751 + PS417_26480 0.88 +0.6 5,726,751 + PS417_26480 0.88 +2.8 5,726,751 + PS417_26480 0.88 +0.2 5,726,751 + PS417_26480 0.88 +0.6 5,726,752 - PS417_26480 0.88 -0.3 5,726,813 + +0.5 5,726,814 - +2.3 5,726,820 - -0.4 5,726,838 + +0.6 5,726,839 - +0.3 5,726,897 + -0.5 5,726,898 - +1.3 5,727,037 + -0.7 5,727,038 - +0.1 5,727,038 - -0.9 5,727,245 + PS417_26485 0.20 +0.8 5,727,246 - PS417_26485 0.20 +0.9 5,727,340 + PS417_26485 0.28 +0.4 5,727,343 + PS417_26485 0.28 +0.1 5,727,343 + PS417_26485 0.28 -0.1 5,727,344 - PS417_26485 0.28 +0.3 5,727,344 - PS417_26485 0.28 +1.3 5,727,440 + PS417_26485 0.36 +0.2 5,727,591 - PS417_26485 0.48 +1.9 5,727,650 - PS417_26485 0.52 +0.4 5,727,833 - PS417_26485 0.67 -0.9 5,728,144 + -1.0 5,728,145 - +0.3 5,728,346 + PS417_26490 0.12 -0.7 5,728,347 - PS417_26490 0.12 -0.3 5,728,364 + PS417_26490 0.14 -2.3 5,728,365 - PS417_26490 0.14 +0.5 5,728,495 + PS417_26490 0.28 +0.2 5,728,496 - PS417_26490 0.29 -0.3 5,728,514 + PS417_26490 0.31 -3.1 5,728,515 - PS417_26490 0.31 +0.9 5,728,515 - PS417_26490 0.31 -0.6 5,728,690 + PS417_26490 0.50 +0.3 5,728,691 - PS417_26490 0.51 -0.6 5,728,691 - PS417_26490 0.51 -1.4 5,728,691 - PS417_26490 0.51 -1.9 5,728,691 - PS417_26490 0.51 +0.1 5,728,691 - PS417_26490 0.51 +0.1 5,728,691 - PS417_26490 0.51 -0.1 5,728,691 - PS417_26490 0.51 -1.8 5,728,865 - PS417_26490 0.70 -0.5 5,729,158 - +1.0 5,729,161 + +0.8 5,729,162 - +0.1 5,729,202 + -0.5 5,729,202 + -2.4 5,729,202 + +3.0 5,729,203 - +0.8
Or see this region's nucleotide sequence