Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26240 and PS417_26245 are separated by 15 nucleotides PS417_26245 and PS417_26250 are separated by 78 nucleotides PS417_26250 and PS417_26255 are separated by 219 nucleotides PS417_26255 and PS417_26260 are separated by 41 nucleotides
PS417_26240: PS417_26240 - N-methylproline demethylase, at 5,672,169 to 5,674,229
_26240
PS417_26245: PS417_26245 - hypothetical protein, at 5,674,245 to 5,674,775
_26245
PS417_26250: PS417_26250 - peptidase M19, at 5,674,854 to 5,675,831
_26250
PS417_26255: PS417_26255 - hypothetical protein, at 5,676,051 to 5,676,452
_26255
PS417_26260: PS417_26260 - hypothetical protein, at 5,676,494 to 5,676,910
_26260
Position (kb) 5674
5675
5676 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5674.096 kb on + strand at 5674.096 kb on + strand at 5674.096 kb on + strand at 5674.099 kb on + strand at 5674.109 kb on - strand at 5674.142 kb on - strand at 5674.247 kb on - strand at 5674.301 kb on - strand, within PS417_26245 at 5674.301 kb on - strand, within PS417_26245 at 5674.387 kb on + strand, within PS417_26245 at 5674.388 kb on - strand, within PS417_26245 at 5674.388 kb on - strand, within PS417_26245 at 5674.612 kb on + strand, within PS417_26245 at 5674.612 kb on + strand, within PS417_26245 at 5674.612 kb on + strand, within PS417_26245 at 5674.613 kb on - strand, within PS417_26245 at 5674.613 kb on - strand, within PS417_26245 at 5674.613 kb on - strand, within PS417_26245 at 5674.628 kb on - strand, within PS417_26245 at 5674.668 kb on - strand, within PS417_26245 at 5674.783 kb on + strand at 5674.784 kb on - strand at 5674.856 kb on - strand at 5675.131 kb on + strand, within PS417_26250 at 5675.131 kb on + strand, within PS417_26250 at 5675.132 kb on - strand, within PS417_26250 at 5675.352 kb on + strand, within PS417_26250 at 5675.353 kb on - strand, within PS417_26250 at 5675.353 kb on - strand, within PS417_26250 at 5675.474 kb on - strand, within PS417_26250 at 5675.894 kb on - strand at 5675.894 kb on - strand at 5675.894 kb on - strand at 5675.894 kb on - strand at 5676.037 kb on + strand at 5676.171 kb on + strand, within PS417_26255 at 5676.171 kb on + strand at 5676.172 kb on - strand, within PS417_26255 at 5676.206 kb on + strand, within PS417_26255 at 5676.207 kb on - strand, within PS417_26255 at 5676.207 kb on - strand, within PS417_26255 at 5676.210 kb on + strand, within PS417_26255 at 5676.210 kb on + strand, within PS417_26255 at 5676.211 kb on - strand, within PS417_26255 at 5676.211 kb on - strand, within PS417_26255 at 5676.243 kb on + strand, within PS417_26255 at 5676.243 kb on + strand, within PS417_26255 at 5676.244 kb on - strand, within PS417_26255 at 5676.450 kb on + strand at 5676.450 kb on + strand at 5676.451 kb on - strand at 5676.490 kb on - strand at 5676.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,674,096 + +0.4 5,674,096 + -1.7 5,674,096 + -0.6 5,674,099 + -0.5 5,674,109 - -1.4 5,674,142 - +0.5 5,674,247 - -0.4 5,674,301 - PS417_26245 0.11 +1.9 5,674,301 - PS417_26245 0.11 +0.7 5,674,387 + PS417_26245 0.27 -2.6 5,674,388 - PS417_26245 0.27 +1.8 5,674,388 - PS417_26245 0.27 +0.2 5,674,612 + PS417_26245 0.69 -1.4 5,674,612 + PS417_26245 0.69 +0.5 5,674,612 + PS417_26245 0.69 +2.2 5,674,613 - PS417_26245 0.69 +0.1 5,674,613 - PS417_26245 0.69 +0.9 5,674,613 - PS417_26245 0.69 +0.3 5,674,628 - PS417_26245 0.72 -0.7 5,674,668 - PS417_26245 0.80 -1.5 5,674,783 + +0.1 5,674,784 - -0.1 5,674,856 - +0.9 5,675,131 + PS417_26250 0.28 -1.4 5,675,131 + PS417_26250 0.28 -2.7 5,675,132 - PS417_26250 0.28 +1.6 5,675,352 + PS417_26250 0.51 -1.3 5,675,353 - PS417_26250 0.51 -0.3 5,675,353 - PS417_26250 0.51 -0.6 5,675,474 - PS417_26250 0.63 -0.9 5,675,894 - -0.5 5,675,894 - +0.9 5,675,894 - +1.3 5,675,894 - -0.4 5,676,037 + -0.0 5,676,171 + PS417_26255 0.30 -1.4 5,676,171 + -1.2 5,676,172 - PS417_26255 0.30 -3.8 5,676,206 + PS417_26255 0.39 -0.0 5,676,207 - PS417_26255 0.39 +0.7 5,676,207 - PS417_26255 0.39 -0.1 5,676,210 + PS417_26255 0.40 -0.9 5,676,210 + PS417_26255 0.40 +1.1 5,676,211 - PS417_26255 0.40 +1.5 5,676,211 - PS417_26255 0.40 +0.3 5,676,243 + PS417_26255 0.48 -0.4 5,676,243 + PS417_26255 0.48 -0.6 5,676,244 - PS417_26255 0.48 -0.0 5,676,450 + -1.5 5,676,450 + +1.3 5,676,451 - +0.2 5,676,490 - +1.3 5,676,490 - -0.5
Or see this region's nucleotide sequence