Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26025 and PS417_26030 are separated by 102 nucleotides PS417_26030 and PS417_26035 are separated by 223 nucleotides
PS417_26025: PS417_26025 - serine/threonine protein kinase, at 5,623,467 to 5,624,441
_26025
PS417_26030: PS417_26030 - chloramphenical resistance permease RarD, at 5,624,544 to 5,625,428
_26030
PS417_26035: PS417_26035 - glycine cleavage system protein R, at 5,625,652 to 5,626,164
_26035
Position (kb) 5624
5625
5626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5623.566 kb on + strand, within PS417_26025 at 5623.582 kb on - strand, within PS417_26025 at 5623.626 kb on + strand, within PS417_26025 at 5623.627 kb on - strand, within PS417_26025 at 5623.676 kb on + strand, within PS417_26025 at 5623.825 kb on - strand at 5623.978 kb on - strand, within PS417_26025 at 5624.022 kb on + strand, within PS417_26025 at 5624.022 kb on + strand, within PS417_26025 at 5624.022 kb on + strand, within PS417_26025 at 5624.022 kb on + strand, within PS417_26025 at 5624.022 kb on + strand, within PS417_26025 at 5624.023 kb on - strand, within PS417_26025 at 5624.023 kb on - strand, within PS417_26025 at 5624.023 kb on - strand, within PS417_26025 at 5624.023 kb on - strand, within PS417_26025 at 5624.292 kb on + strand, within PS417_26025 at 5624.293 kb on - strand, within PS417_26025 at 5624.571 kb on + strand at 5624.572 kb on - strand at 5624.592 kb on + strand at 5624.592 kb on + strand at 5624.592 kb on + strand at 5624.593 kb on - strand at 5624.593 kb on - strand at 5624.619 kb on + strand at 5624.620 kb on - strand at 5624.663 kb on - strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.811 kb on + strand, within PS417_26030 at 5624.812 kb on - strand, within PS417_26030 at 5624.812 kb on - strand, within PS417_26030 at 5624.812 kb on - strand at 5624.812 kb on - strand, within PS417_26030 at 5624.860 kb on - strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.862 kb on + strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5624.863 kb on - strand, within PS417_26030 at 5625.258 kb on + strand, within PS417_26030 at 5625.401 kb on + strand at 5625.439 kb on + strand at 5625.636 kb on + strand at 5625.637 kb on - strand at 5625.706 kb on + strand, within PS417_26035 at 5625.706 kb on + strand, within PS417_26035 at 5625.706 kb on - strand, within PS417_26035 at 5625.804 kb on + strand, within PS417_26035 at 5626.140 kb on + strand at 5626.141 kb on - strand at 5626.150 kb on + strand at 5626.189 kb on + strand at 5626.190 kb on - strand at 5626.324 kb on + strand at 5626.325 kb on - strand at 5626.325 kb on - strand at 5626.329 kb on - strand at 5626.360 kb on + strand at 5626.360 kb on + strand at 5626.360 kb on + strand at 5626.360 kb on + strand at 5626.361 kb on - strand at 5626.363 kb on + strand at 5626.363 kb on + strand at 5626.363 kb on + strand at 5626.364 kb on - strand at 5626.380 kb on + strand at 5626.380 kb on + strand at 5626.380 kb on + strand at 5626.380 kb on + strand at 5626.381 kb on - strand at 5626.381 kb on - strand at 5626.384 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,623,566 + PS417_26025 0.10 +2.0 5,623,582 - PS417_26025 0.12 -1.6 5,623,626 + PS417_26025 0.16 +0.4 5,623,627 - PS417_26025 0.16 -0.1 5,623,676 + PS417_26025 0.21 -0.6 5,623,825 - +0.0 5,623,978 - PS417_26025 0.52 +0.6 5,624,022 + PS417_26025 0.57 +0.6 5,624,022 + PS417_26025 0.57 -0.0 5,624,022 + PS417_26025 0.57 -1.0 5,624,022 + PS417_26025 0.57 -0.5 5,624,022 + PS417_26025 0.57 +0.2 5,624,023 - PS417_26025 0.57 +0.6 5,624,023 - PS417_26025 0.57 -1.6 5,624,023 - PS417_26025 0.57 -1.4 5,624,023 - PS417_26025 0.57 +1.6 5,624,292 + PS417_26025 0.85 -0.3 5,624,293 - PS417_26025 0.85 +0.2 5,624,571 + -1.3 5,624,572 - +1.2 5,624,592 + +1.0 5,624,592 + -0.7 5,624,592 + +0.4 5,624,593 - -1.2 5,624,593 - -1.3 5,624,619 + +0.3 5,624,620 - -1.8 5,624,663 - PS417_26030 0.13 -0.8 5,624,811 + PS417_26030 0.30 -0.9 5,624,811 + PS417_26030 0.30 -0.4 5,624,811 + PS417_26030 0.30 -0.5 5,624,811 + PS417_26030 0.30 -0.1 5,624,812 - PS417_26030 0.30 -1.1 5,624,812 - PS417_26030 0.30 -0.0 5,624,812 - -1.0 5,624,812 - PS417_26030 0.30 -0.2 5,624,860 - PS417_26030 0.36 -0.4 5,624,862 + PS417_26030 0.36 +1.1 5,624,862 + PS417_26030 0.36 -1.6 5,624,862 + PS417_26030 0.36 +0.0 5,624,862 + PS417_26030 0.36 -0.4 5,624,862 + PS417_26030 0.36 +0.7 5,624,863 - PS417_26030 0.36 -0.4 5,624,863 - PS417_26030 0.36 +2.6 5,624,863 - PS417_26030 0.36 -2.9 5,624,863 - PS417_26030 0.36 -0.5 5,625,258 + PS417_26030 0.81 +0.0 5,625,401 + +0.1 5,625,439 + -0.7 5,625,636 + -0.1 5,625,637 - +0.9 5,625,706 + PS417_26035 0.11 +0.0 5,625,706 + PS417_26035 0.11 +1.0 5,625,706 - PS417_26035 0.11 +0.1 5,625,804 + PS417_26035 0.30 -0.3 5,626,140 + +0.4 5,626,141 - -0.3 5,626,150 + +0.1 5,626,189 + -1.0 5,626,190 - -0.4 5,626,324 + -1.4 5,626,325 - +1.2 5,626,325 - +1.3 5,626,329 - -0.6 5,626,360 + -0.8 5,626,360 + -0.1 5,626,360 + +0.0 5,626,360 + -1.8 5,626,361 - -0.6 5,626,363 + -1.1 5,626,363 + -2.7 5,626,363 + -1.1 5,626,364 - +1.9 5,626,380 + -0.2 5,626,380 + -1.0 5,626,380 + +0.2 5,626,380 + +0.8 5,626,381 - -1.7 5,626,381 - -1.6 5,626,384 + +0.1
Or see this region's nucleotide sequence