Strain Fitness in Pseudomonas simiae WCS417 around PS417_25955

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
5,605,274	+		PS417_25950	0.40	+0.1
5,605,382	+		PS417_25950	0.49	+1.8
5,605,691	+		PS417_25950	0.73	-0.9
5,606,031	+				+0.4
5,606,032	-				+1.4
5,606,032	-				+0.9
5,606,045	+				+0.1
5,606,111	-				-0.1
5,606,156	+				+2.4
5,606,157	-				-2.0
5,606,169	+				+0.9
5,606,277	+				-1.2
5,606,294	-				+1.2
5,606,433	+		PS417_25955	0.21	+0.0
5,606,434	-		PS417_25955	0.21	+0.0
5,606,434	-		PS417_25955	0.21	-0.5
5,606,680	-		PS417_25955	0.49	-1.8
5,606,680	-		PS417_25955	0.49	-1.3
5,606,721	+		PS417_25955	0.53	-0.9
5,606,722	-		PS417_25955	0.53	-0.3
5,606,722	-		PS417_25955	0.53	-1.2
5,606,722	-		PS417_25955	0.53	+0.8
5,606,735	-		PS417_25955	0.55	+1.5
5,606,890	+		PS417_25955	0.72	-0.0
5,606,890	+		PS417_25955	0.72	+0.6
5,607,233	+				+1.2
5,607,233	+				+0.5
5,607,234	-				+0.1
5,607,283	+				-0.3
5,607,283	+				+1.6
5,607,284	-				+0.3
5,607,284	-				+0.2
5,607,337	+				+0.2
5,607,338	-				+0.4
5,607,338	-				-0.7
5,607,349	+				+0.3
5,607,350	-				+0.0
5,607,368	+				-0.2
5,607,368	+				+0.6
5,607,491	+				+0.3
5,607,491	+				+0.6
5,607,492	-				+0.6
5,607,548	+		PS417_25960	0.10	+0.4
5,607,548	+		PS417_25960	0.10	+0.7
5,607,549	-		PS417_25960	0.10	-0.4
5,607,549	-		PS417_25960	0.10	+1.6
5,607,554	+		PS417_25960	0.11	-0.2
5,607,555	-		PS417_25960	0.11	+1.9
5,607,555	-		PS417_25960	0.11	-1.8
5,607,563	+		PS417_25960	0.11	-0.1
5,607,563	+		PS417_25960	0.11	-2.2
5,607,563	+		PS417_25960	0.11	+0.5
5,607,581	+		PS417_25960	0.12	-0.4
5,607,750	+		PS417_25960	0.22	+0.7
5,607,751	-		PS417_25960	0.22	-0.5
5,607,751	-		PS417_25960	0.22	+0.2
5,607,751	-		PS417_25960	0.22	-0.7
5,607,752	+		PS417_25960	0.22	+0.4
5,607,752	+		PS417_25960	0.22	+1.8
5,607,752	+		PS417_25960	0.22	+0.6
5,607,752	+		PS417_25960	0.22	+0.1
5,607,753	-		PS417_25960	0.22	-0.0
5,607,753	-		PS417_25960	0.22	-1.0
5,607,753	-		PS417_25960	0.22	-2.5
5,607,753	-		PS417_25960	0.22	+0.7
5,607,824	+		PS417_25960	0.26	+0.6
5,607,824	+		PS417_25960	0.26	+0.7
5,607,824	+		PS417_25960	0.26	+1.2
5,607,825	-		PS417_25960	0.26	+0.3