Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25350 and PS417_25355 are separated by 171 nucleotides PS417_25355 and PS417_25360 are separated by 97 nucleotides PS417_25360 and PS417_25365 are separated by 21 nucleotides
PS417_25350: PS417_25350 - biotin carboxylase, at 5,488,664 to 5,489,773
_25350
PS417_25355: PS417_25355 - AraC family transcriptional regulator, at 5,489,945 to 5,490,904
_25355
PS417_25360: PS417_25360 - Isochorismatase, at 5,491,002 to 5,491,565
_25360
PS417_25365: PS417_25365 - trans-aconitate methyltransferase, at 5,491,587 to 5,492,348
_25365
Position (kb) 5489
5490
5491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5488.950 kb on + strand, within PS417_25350 at 5488.950 kb on + strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.962 kb on + strand, within PS417_25350 at 5489.015 kb on + strand, within PS417_25350 at 5489.039 kb on + strand, within PS417_25350 at 5489.040 kb on - strand, within PS417_25350 at 5489.052 kb on + strand, within PS417_25350 at 5489.052 kb on + strand, within PS417_25350 at 5489.053 kb on - strand, within PS417_25350 at 5489.122 kb on - strand, within PS417_25350 at 5489.122 kb on - strand, within PS417_25350 at 5489.148 kb on + strand, within PS417_25350 at 5489.149 kb on - strand, within PS417_25350 at 5489.343 kb on + strand, within PS417_25350 at 5489.344 kb on - strand, within PS417_25350 at 5489.604 kb on + strand, within PS417_25350 at 5489.604 kb on + strand, within PS417_25350 at 5489.637 kb on + strand, within PS417_25350 at 5489.637 kb on + strand, within PS417_25350 at 5489.638 kb on - strand, within PS417_25350 at 5489.745 kb on - strand at 5489.804 kb on + strand at 5489.804 kb on + strand at 5489.804 kb on + strand at 5489.804 kb on + strand at 5489.805 kb on - strand at 5489.805 kb on - strand at 5489.805 kb on - strand at 5489.806 kb on + strand at 5489.806 kb on + strand at 5490.117 kb on + strand, within PS417_25355 at 5490.529 kb on + strand, within PS417_25355 at 5490.529 kb on + strand, within PS417_25355 at 5490.530 kb on - strand, within PS417_25355 at 5490.873 kb on + strand at 5490.874 kb on - strand at 5490.874 kb on - strand at 5490.874 kb on - strand at 5490.924 kb on - strand at 5490.961 kb on + strand at 5490.961 kb on + strand at 5490.961 kb on + strand at 5490.961 kb on + strand at 5490.966 kb on + strand at 5490.966 kb on + strand at 5490.967 kb on - strand at 5491.044 kb on + strand at 5491.044 kb on + strand at 5491.396 kb on - strand, within PS417_25360 at 5491.396 kb on - strand, within PS417_25360 at 5491.396 kb on - strand, within PS417_25360 at 5491.485 kb on + strand, within PS417_25360 at 5491.485 kb on + strand, within PS417_25360 at 5491.485 kb on + strand, within PS417_25360 at 5491.485 kb on + strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.537 kb on - strand at 5491.793 kb on - strand, within PS417_25365 at 5491.844 kb on - strand, within PS417_25365 at 5491.844 kb on - strand, within PS417_25365 at 5491.846 kb on + strand, within PS417_25365 at 5491.849 kb on + strand, within PS417_25365 at 5491.850 kb on - strand, within PS417_25365 at 5491.850 kb on - strand, within PS417_25365
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,488,950 + PS417_25350 0.26 -0.5 5,488,950 + PS417_25350 0.26 -1.5 5,488,951 - PS417_25350 0.26 +2.5 5,488,951 - PS417_25350 0.26 -1.0 5,488,951 - PS417_25350 0.26 -1.9 5,488,951 - PS417_25350 0.26 -0.4 5,488,962 + PS417_25350 0.27 +1.9 5,489,015 + PS417_25350 0.32 -0.2 5,489,039 + PS417_25350 0.34 -0.3 5,489,040 - PS417_25350 0.34 +1.2 5,489,052 + PS417_25350 0.35 -0.2 5,489,052 + PS417_25350 0.35 -1.5 5,489,053 - PS417_25350 0.35 +0.5 5,489,122 - PS417_25350 0.41 -2.5 5,489,122 - PS417_25350 0.41 -1.0 5,489,148 + PS417_25350 0.44 +0.5 5,489,149 - PS417_25350 0.44 +0.2 5,489,343 + PS417_25350 0.61 -0.9 5,489,344 - PS417_25350 0.61 +0.8 5,489,604 + PS417_25350 0.85 -3.1 5,489,604 + PS417_25350 0.85 +1.6 5,489,637 + PS417_25350 0.88 +0.2 5,489,637 + PS417_25350 0.88 +0.9 5,489,638 - PS417_25350 0.88 +0.3 5,489,745 - -0.6 5,489,804 + +0.1 5,489,804 + -0.1 5,489,804 + +0.9 5,489,804 + -2.1 5,489,805 - -2.2 5,489,805 - -1.6 5,489,805 - +0.5 5,489,806 + +0.5 5,489,806 + -0.4 5,490,117 + PS417_25355 0.18 -0.5 5,490,529 + PS417_25355 0.61 +0.2 5,490,529 + PS417_25355 0.61 -1.1 5,490,530 - PS417_25355 0.61 -0.1 5,490,873 + -1.6 5,490,874 - -0.6 5,490,874 - -0.1 5,490,874 - +0.8 5,490,924 - +0.2 5,490,961 + +0.6 5,490,961 + -1.0 5,490,961 + -0.7 5,490,961 + -1.0 5,490,966 + -0.8 5,490,966 + -0.6 5,490,967 - -2.9 5,491,044 + +0.4 5,491,044 + +0.0 5,491,396 - PS417_25360 0.70 -0.4 5,491,396 - PS417_25360 0.70 -0.2 5,491,396 - PS417_25360 0.70 -0.4 5,491,485 + PS417_25360 0.86 -1.1 5,491,485 + PS417_25360 0.86 -1.4 5,491,485 + PS417_25360 0.86 -0.0 5,491,485 + PS417_25360 0.86 +0.6 5,491,486 - PS417_25360 0.86 +0.0 5,491,486 - PS417_25360 0.86 +0.2 5,491,486 - PS417_25360 0.86 +0.4 5,491,486 - PS417_25360 0.86 -1.2 5,491,486 - PS417_25360 0.86 +0.5 5,491,537 - -0.4 5,491,793 - PS417_25365 0.27 +0.2 5,491,844 - PS417_25365 0.34 -0.9 5,491,844 - PS417_25365 0.34 +1.6 5,491,846 + PS417_25365 0.34 +0.2 5,491,849 + PS417_25365 0.34 -0.4 5,491,850 - PS417_25365 0.35 -0.1 5,491,850 - PS417_25365 0.35 -0.9
Or see this region's nucleotide sequence