Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24420 and PS417_24430 are separated by 206 nucleotides PS417_24430 and PS417_24435 overlap by 4 nucleotides PS417_24435 and PS417_24440 are separated by 133 nucleotides PS417_24440 and PS417_24445 are separated by 78 nucleotides
PS417_24420: PS417_24420 - RNA polymerase sigma70, at 5,303,182 to 5,303,703
_24420
PS417_24430: PS417_24430 - 3-dehydroquinate dehydratase, at 5,303,910 to 5,304,359
_24430
PS417_24435: PS417_24435 - shikimate dehydrogenase, at 5,304,356 to 5,305,204
_24435
PS417_24440: PS417_24440 - TetR family transcriptional regulator, at 5,305,338 to 5,305,979
_24440
PS417_24445: PS417_24445 - 4-hydroxyphenylpyruvate dioxygenase, at 5,306,058 to 5,307,959
_24445
Position (kb) 5304
5305
5306 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5303.529 kb on - strand, within PS417_24420 at 5303.743 kb on + strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.892 kb on - strand at 5303.980 kb on - strand, within PS417_24430 at 5304.340 kb on + strand at 5304.341 kb on - strand at 5304.558 kb on + strand, within PS417_24435 at 5304.559 kb on + strand, within PS417_24435 at 5304.563 kb on + strand, within PS417_24435 at 5304.817 kb on + strand, within PS417_24435 at 5304.818 kb on - strand, within PS417_24435 at 5305.034 kb on + strand, within PS417_24435 at 5305.198 kb on + strand at 5305.198 kb on + strand at 5305.335 kb on + strand at 5305.394 kb on + strand at 5305.440 kb on - strand, within PS417_24440 at 5305.610 kb on - strand, within PS417_24440 at 5305.813 kb on + strand, within PS417_24440 at 5305.813 kb on + strand, within PS417_24440 at 5305.816 kb on + strand, within PS417_24440 at 5305.816 kb on + strand, within PS417_24440 at 5305.817 kb on - strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.819 kb on + strand, within PS417_24440 at 5305.820 kb on - strand, within PS417_24440 at 5305.820 kb on - strand, within PS417_24440 at 5305.918 kb on - strand at 5306.000 kb on + strand at 5306.060 kb on - strand at 5306.061 kb on + strand at 5306.062 kb on - strand at 5306.137 kb on + strand at 5306.146 kb on + strand at 5306.203 kb on + strand at 5306.203 kb on + strand at 5306.204 kb on - strand at 5306.204 kb on - strand at 5306.204 kb on - strand at 5306.204 kb on - strand at 5306.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,303,529 - PS417_24420 0.66 -2.0 5,303,743 + -1.8 5,303,892 - +2.2 5,303,892 - -0.5 5,303,892 - -0.5 5,303,892 - -0.7 5,303,892 - +0.8 5,303,980 - PS417_24430 0.16 +0.3 5,304,340 + +0.3 5,304,341 - +1.8 5,304,558 + PS417_24435 0.24 +0.0 5,304,559 + PS417_24435 0.24 +0.7 5,304,563 + PS417_24435 0.24 -0.1 5,304,817 + PS417_24435 0.54 -0.1 5,304,818 - PS417_24435 0.54 +0.7 5,305,034 + PS417_24435 0.80 +1.2 5,305,198 + +0.0 5,305,198 + -0.2 5,305,335 + -0.7 5,305,394 + +0.1 5,305,440 - PS417_24440 0.16 +0.1 5,305,610 - PS417_24440 0.42 -0.1 5,305,813 + PS417_24440 0.74 +0.3 5,305,813 + PS417_24440 0.74 +0.0 5,305,816 + PS417_24440 0.74 +0.8 5,305,816 + PS417_24440 0.74 -0.3 5,305,817 - PS417_24440 0.75 -0.8 5,305,819 + PS417_24440 0.75 -0.4 5,305,819 + PS417_24440 0.75 +0.2 5,305,819 + PS417_24440 0.75 +0.2 5,305,819 + PS417_24440 0.75 +0.7 5,305,819 + PS417_24440 0.75 -0.1 5,305,819 + PS417_24440 0.75 -0.6 5,305,819 + PS417_24440 0.75 +1.8 5,305,819 + PS417_24440 0.75 -1.8 5,305,819 + PS417_24440 0.75 +0.2 5,305,819 + PS417_24440 0.75 +1.6 5,305,819 + PS417_24440 0.75 -2.0 5,305,819 + PS417_24440 0.75 -0.6 5,305,820 - PS417_24440 0.75 -0.1 5,305,820 - PS417_24440 0.75 +0.3 5,305,918 - -1.7 5,306,000 + -0.2 5,306,060 - +0.2 5,306,061 + +0.1 5,306,062 - +1.6 5,306,137 + +0.7 5,306,146 + -1.2 5,306,203 + +1.2 5,306,203 + -0.2 5,306,204 - +0.0 5,306,204 - +0.3 5,306,204 - -0.7 5,306,204 - +0.2 5,306,204 - +1.9
Or see this region's nucleotide sequence