Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23435 and PS417_23440 are separated by 173 nucleotides PS417_23440 and PS417_23445 overlap by 1 nucleotides PS417_23445 and PS417_23450 are separated by 149 nucleotides
PS417_23435: PS417_23435 - serine/threonine protein kinase, at 5,076,669 to 5,077,580
_23435
PS417_23440: PS417_23440 - alpha/beta hydrolase, at 5,077,754 to 5,078,659
_23440
PS417_23445: PS417_23445 - aldolase, at 5,078,659 to 5,079,441
_23445
PS417_23450: PS417_23450 - membrane protein, at 5,079,591 to 5,080,277
_23450
Position (kb) 5077
5078
5079 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5076.910 kb on + strand, within PS417_23435 at 5076.910 kb on + strand, within PS417_23435 at 5076.910 kb on + strand, within PS417_23435 at 5076.910 kb on + strand, within PS417_23435 at 5077.114 kb on + strand, within PS417_23435 at 5077.115 kb on - strand, within PS417_23435 at 5077.115 kb on - strand, within PS417_23435 at 5077.115 kb on - strand, within PS417_23435 at 5077.115 kb on - strand, within PS417_23435 at 5077.115 kb on - strand, within PS417_23435 at 5077.115 kb on - strand, within PS417_23435 at 5077.154 kb on - strand, within PS417_23435 at 5077.199 kb on - strand, within PS417_23435 at 5077.812 kb on + strand at 5077.812 kb on + strand at 5077.813 kb on - strand at 5077.918 kb on + strand, within PS417_23440 at 5077.918 kb on + strand, within PS417_23440 at 5077.919 kb on - strand, within PS417_23440 at 5077.919 kb on - strand, within PS417_23440 at 5077.919 kb on - strand, within PS417_23440 at 5078.026 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.028 kb on + strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.029 kb on - strand, within PS417_23440 at 5078.508 kb on + strand, within PS417_23440 at 5078.508 kb on + strand, within PS417_23440 at 5078.667 kb on + strand at 5078.670 kb on - strand at 5079.115 kb on + strand, within PS417_23445 at 5079.115 kb on + strand, within PS417_23445 at 5079.115 kb on + strand at 5079.153 kb on + strand at 5079.153 kb on + strand, within PS417_23445 at 5079.153 kb on + strand, within PS417_23445 at 5079.154 kb on - strand, within PS417_23445 at 5079.155 kb on + strand, within PS417_23445 at 5079.176 kb on + strand, within PS417_23445 at 5079.176 kb on + strand, within PS417_23445 at 5079.177 kb on - strand, within PS417_23445 at 5079.303 kb on + strand, within PS417_23445 at 5079.497 kb on - strand at 5079.497 kb on - strand at 5079.497 kb on - strand at 5079.567 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 5,076,910 + PS417_23435 0.26 +1.0 5,076,910 + PS417_23435 0.26 -0.8 5,076,910 + PS417_23435 0.26 -0.0 5,076,910 + PS417_23435 0.26 -2.7 5,077,114 + PS417_23435 0.49 -0.4 5,077,115 - PS417_23435 0.49 -1.4 5,077,115 - PS417_23435 0.49 -0.7 5,077,115 - PS417_23435 0.49 +2.7 5,077,115 - PS417_23435 0.49 +0.1 5,077,115 - PS417_23435 0.49 +1.4 5,077,115 - PS417_23435 0.49 +1.0 5,077,154 - PS417_23435 0.53 +2.6 5,077,199 - PS417_23435 0.58 -0.0 5,077,812 + +0.5 5,077,812 + -0.4 5,077,813 - -0.3 5,077,918 + PS417_23440 0.18 -0.1 5,077,918 + PS417_23440 0.18 -2.0 5,077,919 - PS417_23440 0.18 -0.6 5,077,919 - PS417_23440 0.18 -1.1 5,077,919 - PS417_23440 0.18 +0.3 5,078,026 + PS417_23440 0.30 -1.2 5,078,028 + PS417_23440 0.30 +0.2 5,078,028 + PS417_23440 0.30 -0.8 5,078,028 + PS417_23440 0.30 -1.1 5,078,028 + PS417_23440 0.30 +0.6 5,078,028 + PS417_23440 0.30 -0.1 5,078,028 + PS417_23440 0.30 -1.4 5,078,028 + PS417_23440 0.30 -0.4 5,078,028 + PS417_23440 0.30 -0.0 5,078,028 + PS417_23440 0.30 -0.6 5,078,029 - PS417_23440 0.30 -0.4 5,078,029 - PS417_23440 0.30 +0.3 5,078,029 - PS417_23440 0.30 +1.6 5,078,029 - PS417_23440 0.30 +0.2 5,078,029 - PS417_23440 0.30 -1.4 5,078,029 - PS417_23440 0.30 -0.1 5,078,029 - PS417_23440 0.30 -0.6 5,078,508 + PS417_23440 0.83 -1.2 5,078,508 + PS417_23440 0.83 -0.2 5,078,667 + +0.3 5,078,670 - -0.6 5,079,115 + PS417_23445 0.58 -0.3 5,079,115 + PS417_23445 0.58 -2.7 5,079,115 + +2.6 5,079,153 + +0.6 5,079,153 + PS417_23445 0.63 -0.3 5,079,153 + PS417_23445 0.63 -0.9 5,079,154 - PS417_23445 0.63 +0.4 5,079,155 + PS417_23445 0.63 -1.8 5,079,176 + PS417_23445 0.66 -0.7 5,079,176 + PS417_23445 0.66 +0.4 5,079,177 - PS417_23445 0.66 +1.1 5,079,303 + PS417_23445 0.82 -1.6 5,079,497 - -0.7 5,079,497 - +0.2 5,079,497 - -1.4 5,079,567 + -0.0
Or see this region's nucleotide sequence