Strain Fitness in Pseudomonas simiae WCS417 around PS417_21935

Experiment: P. simiae OR Antrim MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21925 and PS417_21930 are separated by 81 nucleotidesPS417_21930 and PS417_21935 are separated by 88 nucleotidesPS417_21935 and PS417_21940 are separated by 11 nucleotidesPS417_21940 and PS417_21945 are separated by 204 nucleotides PS417_21925: PS417_21925 - short-chain dehydrogenase, at 4,758,024 to 4,758,782 _21925 PS417_21930: PS417_21930 - membrane protein, at 4,758,864 to 4,759,328 _21930 PS417_21935: PS417_21935 - transcriptional regulator, at 4,759,417 to 4,760,271 _21935 PS417_21940: PS417_21940 - hypothetical protein, at 4,760,283 to 4,760,528 _21940 PS417_21945: PS417_21945 - RNA polymerase subunit sigma-24, at 4,760,733 to 4,761,956 _21945 Position (kb) 4759 4760 4761Strain fitness (log2 ratio) -2 -1 0 1at 4758.446 kb on + strand, within PS417_21925at 4758.447 kb on - strand, within PS417_21925at 4758.447 kb on - strand, within PS417_21925at 4758.493 kb on - strand, within PS417_21925at 4758.894 kb on - strandat 4758.940 kb on + strand, within PS417_21930at 4758.952 kb on + strand, within PS417_21930at 4758.953 kb on - strand, within PS417_21930at 4758.953 kb on - strand, within PS417_21930at 4758.953 kb on - strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.958 kb on + strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.959 kb on - strand, within PS417_21930at 4758.964 kb on + strand, within PS417_21930at 4759.001 kb on + strand, within PS417_21930at 4759.391 kb on - strandat 4759.554 kb on - strand, within PS417_21935at 4759.721 kb on - strand, within PS417_21935at 4759.721 kb on - strand, within PS417_21935at 4759.959 kb on - strand, within PS417_21935at 4760.117 kb on + strand, within PS417_21935at 4760.323 kb on + strandat 4760.394 kb on - strand, within PS417_21940at 4760.592 kb on + strandat 4760.722 kb on + strandat 4760.821 kb on + strandat 4760.894 kb on - strand, within PS417_21945at 4761.022 kb on - strand, within PS417_21945at 4761.022 kb on - strand, within PS417_21945at 4761.022 kb on - strand, within PS417_21945at 4761.028 kb on + strand, within PS417_21945at 4761.028 kb on + strand, within PS417_21945

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
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4,758,446 + PS417_21925 0.56 -0.4
4,758,447 - PS417_21925 0.56 +0.8
4,758,447 - PS417_21925 0.56 +0.4
4,758,493 - PS417_21925 0.62 -0.6
4,758,894 - -0.7
4,758,940 + PS417_21930 0.16 +1.3
4,758,952 + PS417_21930 0.19 +0.9
4,758,953 - PS417_21930 0.19 -0.4
4,758,953 - PS417_21930 0.19 -1.6
4,758,953 - PS417_21930 0.19 -0.7
4,758,958 + PS417_21930 0.20 +0.3
4,758,958 + PS417_21930 0.20 +0.7
4,758,958 + PS417_21930 0.20 -1.3
4,758,958 + PS417_21930 0.20 -2.1
4,758,958 + PS417_21930 0.20 -0.2
4,758,958 + PS417_21930 0.20 -0.8
4,758,958 + PS417_21930 0.20 +0.9
4,758,958 + PS417_21930 0.20 -1.6
4,758,958 + PS417_21930 0.20 -0.5
4,758,958 + PS417_21930 0.20 +0.5
4,758,959 - PS417_21930 0.20 -1.4
4,758,959 - PS417_21930 0.20 -1.5
4,758,959 - PS417_21930 0.20 +1.0
4,758,959 - PS417_21930 0.20 -0.9
4,758,959 - PS417_21930 0.20 -0.1
4,758,959 - PS417_21930 0.20 -1.4
4,758,964 + PS417_21930 0.22 -0.8
4,759,001 + PS417_21930 0.29 -0.1
4,759,391 - -0.3
4,759,554 - PS417_21935 0.16 -1.1
4,759,721 - PS417_21935 0.36 -0.6
4,759,721 - PS417_21935 0.36 -0.1
4,759,959 - PS417_21935 0.63 -0.8
4,760,117 + PS417_21935 0.82 -0.3
4,760,323 + +0.2
4,760,394 - PS417_21940 0.45 +1.5
4,760,592 + -0.7
4,760,722 + +0.9
4,760,821 + -0.7
4,760,894 - PS417_21945 0.13 -0.5
4,761,022 - PS417_21945 0.24 -1.8
4,761,022 - PS417_21945 0.24 -2.3
4,761,022 - PS417_21945 0.24 +1.0
4,761,028 + PS417_21945 0.24 +0.3
4,761,028 + PS417_21945 0.24 +0.6

Or see this region's nucleotide sequence