Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21375 and PS417_21380 overlap by 4 nucleotides PS417_21380 and PS417_21385 are separated by 64 nucleotides PS417_21385 and PS417_21390 are separated by 16 nucleotides PS417_21390 and PS417_21395 are separated by 75 nucleotides
PS417_21375: PS417_21375 - ADP-ribosylglycohydrolase, at 4,643,889 to 4,644,890
_21375
PS417_21380: PS417_21380 - GntR family transcriptional regulator, at 4,644,887 to 4,645,606
_21380
PS417_21385: PS417_21385 - hypothetical protein, at 4,645,671 to 4,646,231
_21385
PS417_21390: PS417_21390 - hypothetical protein, at 4,646,248 to 4,646,853
_21390
PS417_21395: PS417_21395 - radical SAM protein, at 4,646,929 to 4,647,897
_21395
Position (kb) 4645
4646
4647 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4644.740 kb on + strand, within PS417_21375 at 4644.741 kb on - strand, within PS417_21375 at 4644.856 kb on + strand at 4644.951 kb on + strand at 4644.951 kb on + strand at 4644.952 kb on - strand at 4644.952 kb on - strand at 4644.952 kb on - strand at 4644.978 kb on + strand, within PS417_21380 at 4644.978 kb on + strand, within PS417_21380 at 4644.978 kb on + strand, within PS417_21380 at 4644.978 kb on + strand, within PS417_21380 at 4644.979 kb on - strand, within PS417_21380 at 4644.979 kb on - strand, within PS417_21380 at 4644.979 kb on - strand, within PS417_21380 at 4645.091 kb on - strand, within PS417_21380 at 4645.098 kb on + strand, within PS417_21380 at 4645.420 kb on - strand, within PS417_21380 at 4645.603 kb on - strand at 4645.771 kb on + strand, within PS417_21385 at 4645.772 kb on - strand, within PS417_21385 at 4645.772 kb on - strand, within PS417_21385 at 4645.921 kb on - strand, within PS417_21385 at 4645.921 kb on - strand, within PS417_21385 at 4646.020 kb on + strand, within PS417_21385 at 4646.021 kb on - strand, within PS417_21385 at 4646.095 kb on + strand at 4646.163 kb on + strand, within PS417_21385 at 4646.164 kb on - strand, within PS417_21385 at 4646.164 kb on - strand, within PS417_21385 at 4646.232 kb on - strand at 4646.249 kb on + strand at 4646.249 kb on + strand at 4646.250 kb on - strand at 4646.358 kb on + strand, within PS417_21390 at 4646.367 kb on + strand, within PS417_21390 at 4646.368 kb on - strand, within PS417_21390 at 4646.378 kb on + strand, within PS417_21390 at 4646.507 kb on + strand, within PS417_21390 at 4646.508 kb on - strand, within PS417_21390 at 4646.508 kb on - strand, within PS417_21390 at 4646.516 kb on + strand, within PS417_21390 at 4646.516 kb on + strand, within PS417_21390 at 4646.685 kb on + strand, within PS417_21390 at 4646.707 kb on + strand, within PS417_21390 at 4646.708 kb on - strand, within PS417_21390 at 4646.847 kb on + strand at 4646.848 kb on - strand at 4646.848 kb on - strand at 4646.848 kb on - strand at 4646.856 kb on + strand at 4646.856 kb on + strand at 4646.930 kb on + strand at 4647.065 kb on + strand, within PS417_21395 at 4647.065 kb on + strand, within PS417_21395 at 4647.066 kb on - strand, within PS417_21395 at 4647.066 kb on - strand, within PS417_21395 at 4647.135 kb on + strand, within PS417_21395 at 4647.177 kb on - strand, within PS417_21395 at 4647.190 kb on + strand, within PS417_21395
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 4,644,740 + PS417_21375 0.85 -0.2 4,644,741 - PS417_21375 0.85 -1.0 4,644,856 + +0.2 4,644,951 + -0.0 4,644,951 + +0.5 4,644,952 - +0.1 4,644,952 - -0.3 4,644,952 - -2.2 4,644,978 + PS417_21380 0.13 -2.2 4,644,978 + PS417_21380 0.13 +0.5 4,644,978 + PS417_21380 0.13 -1.3 4,644,978 + PS417_21380 0.13 -1.0 4,644,979 - PS417_21380 0.13 +1.1 4,644,979 - PS417_21380 0.13 +0.2 4,644,979 - PS417_21380 0.13 +1.8 4,645,091 - PS417_21380 0.28 -0.2 4,645,098 + PS417_21380 0.29 +1.0 4,645,420 - PS417_21380 0.74 -1.5 4,645,603 - +1.1 4,645,771 + PS417_21385 0.18 -0.0 4,645,772 - PS417_21385 0.18 +0.6 4,645,772 - PS417_21385 0.18 +0.5 4,645,921 - PS417_21385 0.45 -0.8 4,645,921 - PS417_21385 0.45 -1.3 4,646,020 + PS417_21385 0.62 -1.1 4,646,021 - PS417_21385 0.62 +1.0 4,646,095 + +1.5 4,646,163 + PS417_21385 0.88 -1.3 4,646,164 - PS417_21385 0.88 -1.7 4,646,164 - PS417_21385 0.88 -0.4 4,646,232 - -0.0 4,646,249 + +0.0 4,646,249 + -0.4 4,646,250 - +0.9 4,646,358 + PS417_21390 0.18 +0.5 4,646,367 + PS417_21390 0.20 -1.3 4,646,368 - PS417_21390 0.20 -1.8 4,646,378 + PS417_21390 0.21 +1.2 4,646,507 + PS417_21390 0.43 -0.8 4,646,508 - PS417_21390 0.43 +0.5 4,646,508 - PS417_21390 0.43 +0.2 4,646,516 + PS417_21390 0.44 +1.5 4,646,516 + PS417_21390 0.44 -1.8 4,646,685 + PS417_21390 0.72 +0.4 4,646,707 + PS417_21390 0.76 -0.1 4,646,708 - PS417_21390 0.76 +1.1 4,646,847 + +0.8 4,646,848 - +0.3 4,646,848 - -0.5 4,646,848 - +1.3 4,646,856 + -0.6 4,646,856 + -0.0 4,646,930 + -1.3 4,647,065 + PS417_21395 0.14 +0.2 4,647,065 + PS417_21395 0.14 +0.0 4,647,066 - PS417_21395 0.14 +0.6 4,647,066 - PS417_21395 0.14 +0.3 4,647,135 + PS417_21395 0.21 -0.2 4,647,177 - PS417_21395 0.26 -1.1 4,647,190 + PS417_21395 0.27 +1.1
Or see this region's nucleotide sequence