Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00195 and PS417_00200 are separated by 156 nucleotides PS417_00200 and PS417_00205 are separated by 115 nucleotides PS417_00205 and PS417_00210 are separated by 59 nucleotides PS417_00210 and PS417_00215 are separated by 217 nucleotides PS417_00215 and PS417_00220 are separated by 235 nucleotides
PS417_00195: PS417_00195 - hypothetical protein, at 40,956 to 41,282
_00195
PS417_00200: PS417_00200 - hypothetical protein, at 41,439 to 41,654
_00200
PS417_00205: PS417_00205 - hypothetical protein, at 41,770 to 41,997
_00205
PS417_00210: PS417_00210 - hypothetical protein, at 42,057 to 43,058
_00210
PS417_00215: PS417_00215 - peroxiredoxin OsmC, at 43,276 to 43,707
_00215
PS417_00220: PS417_00220 - hypothetical protein, at 43,943 to 44,182
_00220
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.316 kb on + strand at 41.317 kb on - strand at 41.317 kb on - strand at 41.320 kb on + strand at 41.351 kb on - strand at 41.351 kb on - strand at 41.351 kb on - strand at 41.355 kb on - strand at 41.390 kb on + strand at 41.417 kb on + strand at 41.417 kb on + strand at 41.458 kb on - strand at 41.458 kb on - strand at 41.648 kb on + strand at 41.648 kb on + strand at 41.649 kb on - strand at 41.702 kb on - strand at 41.745 kb on + strand at 41.764 kb on + strand at 41.764 kb on + strand at 41.793 kb on - strand, within PS417_00205 at 42.347 kb on - strand, within PS417_00210 at 42.347 kb on - strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.534 kb on + strand, within PS417_00210 at 42.535 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.623 kb on - strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.902 kb on + strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.903 kb on - strand, within PS417_00210 at 42.934 kb on + strand, within PS417_00210 at 43.039 kb on - strand at 43.059 kb on - strand at 43.059 kb on - strand at 43.143 kb on + strand at 43.144 kb on - strand at 43.146 kb on - strand at 43.276 kb on - strand at 43.281 kb on + strand at 43.281 kb on + strand at 43.338 kb on + strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.339 kb on - strand, within PS417_00215 at 43.361 kb on + strand, within PS417_00215 at 43.362 kb on - strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.526 kb on + strand, within PS417_00215 at 43.527 kb on - strand, within PS417_00215 at 43.665 kb on - strand at 43.700 kb on + strand at 43.700 kb on + strand at 43.701 kb on - strand at 43.716 kb on + strand at 43.717 kb on - strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.841 kb on + strand at 43.842 kb on - strand at 43.845 kb on + strand at 43.846 kb on - strand at 43.852 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.885 kb on + strand at 43.886 kb on - strand at 43.886 kb on - strand at 43.887 kb on + strand at 43.892 kb on + strand at 43.893 kb on - strand at 43.893 kb on - strand at 43.902 kb on - strand at 43.977 kb on + strand, within PS417_00220
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 41,316 + -0.6 41,316 + +0.9 41,316 + -0.2 41,316 + +0.7 41,316 + +0.4 41,316 + -0.5 41,317 - +4.8 41,317 - -1.5 41,320 + +1.1 41,351 - -0.0 41,351 - +3.3 41,351 - +0.0 41,355 - +4.6 41,390 + -1.3 41,417 + -1.7 41,417 + +0.4 41,458 - -0.5 41,458 - -0.8 41,648 + -1.1 41,648 + +0.2 41,649 - -1.1 41,702 - +1.0 41,745 + -1.1 41,764 + -0.1 41,764 + -0.7 41,793 - PS417_00205 0.10 +0.9 42,347 - PS417_00210 0.29 +0.2 42,347 - PS417_00210 0.29 -1.2 42,534 + PS417_00210 0.48 +0.2 42,534 + PS417_00210 0.48 -0.8 42,534 + PS417_00210 0.48 -2.2 42,535 - PS417_00210 0.48 -1.2 42,623 - PS417_00210 0.56 +0.2 42,623 - PS417_00210 0.56 -0.7 42,902 + PS417_00210 0.84 +0.5 42,902 + PS417_00210 0.84 -0.5 42,903 - PS417_00210 0.84 -0.6 42,903 - PS417_00210 0.84 -1.4 42,934 + PS417_00210 0.88 -0.6 43,039 - +1.2 43,059 - -0.2 43,059 - +0.2 43,143 + +0.2 43,144 - -0.7 43,146 - +0.1 43,276 - +0.6 43,281 + +1.2 43,281 + +0.4 43,338 + PS417_00215 0.14 +1.6 43,339 - PS417_00215 0.15 +0.0 43,339 - PS417_00215 0.15 +0.9 43,361 + PS417_00215 0.20 -0.8 43,362 - PS417_00215 0.20 -0.3 43,526 + PS417_00215 0.58 +0.5 43,526 + PS417_00215 0.58 +1.5 43,527 - PS417_00215 0.58 +0.9 43,665 - -0.5 43,700 + -0.7 43,700 + +1.6 43,701 - -1.9 43,716 + +1.6 43,717 - +1.1 43,841 + -1.7 43,841 + -1.4 43,841 + -1.3 43,841 + -1.7 43,841 + -1.0 43,842 - -0.0 43,845 + -0.1 43,846 - -1.5 43,852 + -0.6 43,885 + -1.4 43,885 + -0.6 43,885 + +2.6 43,885 + -0.1 43,886 - -1.0 43,886 - +0.3 43,887 + +2.2 43,892 + -0.1 43,893 - +0.1 43,893 - -1.3 43,902 - +0.6 43,977 + PS417_00220 0.14 +0.2
Or see this region's nucleotide sequence