Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02035 and PS417_02040 overlap by 4 nucleotides PS417_02040 and PS417_02045 overlap by 4 nucleotides PS417_02045 and PS417_02050 overlap by 4 nucleotides PS417_02050 and PS417_02055 overlap by 4 nucleotides
PS417_02035: PS417_02035 - 3-ketoacyl-ACP reductase, at 457,626 to 458,354
_02035
PS417_02040: PS417_02040 - 3-hydroxylacyl-ACP dehydratase, at 458,351 to 458,812
_02040
PS417_02045: PS417_02045 - 3-oxoacyl-ACP synthase, at 458,809 to 459,975
_02045
PS417_02050: PS417_02050 - hypothetical protein, at 459,972 to 460,454
_02050
PS417_02055: PS417_02055 - methyltransferase, at 460,451 to 461,185
_02055
Position (kb) 458
459
460 Strain fitness (log2 ratio) -1
0
1 at 457.897 kb on + strand, within PS417_02035 at 457.898 kb on - strand, within PS417_02035 at 457.953 kb on - strand, within PS417_02035 at 458.009 kb on - strand, within PS417_02035 at 458.114 kb on - strand, within PS417_02035 at 458.378 kb on + strand at 458.379 kb on - strand at 458.408 kb on + strand, within PS417_02040 at 458.408 kb on + strand, within PS417_02040 at 458.409 kb on - strand, within PS417_02040 at 458.409 kb on - strand, within PS417_02040 at 458.914 kb on + strand at 458.914 kb on + strand at 458.915 kb on - strand at 459.234 kb on + strand, within PS417_02045 at 459.235 kb on - strand, within PS417_02045 at 459.599 kb on + strand, within PS417_02045 at 459.707 kb on + strand, within PS417_02045 at 459.708 kb on - strand, within PS417_02045 at 460.716 kb on + strand, within PS417_02055 at 460.716 kb on + strand, within PS417_02055 at 460.717 kb on - strand, within PS417_02055 at 460.717 kb on - strand, within PS417_02055 at 460.746 kb on + strand, within PS417_02055 at 460.747 kb on - strand, within PS417_02055
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 457,897 + PS417_02035 0.37 +0.1 457,898 - PS417_02035 0.37 -1.0 457,953 - PS417_02035 0.45 -1.6 458,009 - PS417_02035 0.53 +1.1 458,114 - PS417_02035 0.67 -0.4 458,378 + +0.8 458,379 - +1.6 458,408 + PS417_02040 0.12 +0.2 458,408 + PS417_02040 0.12 +0.5 458,409 - PS417_02040 0.13 -0.3 458,409 - PS417_02040 0.13 +0.4 458,914 + -1.0 458,914 + -0.4 458,915 - -0.3 459,234 + PS417_02045 0.36 -1.7 459,235 - PS417_02045 0.37 -1.4 459,599 + PS417_02045 0.68 -1.0 459,707 + PS417_02045 0.77 -0.3 459,708 - PS417_02045 0.77 +0.3 460,716 + PS417_02055 0.36 +0.2 460,716 + PS417_02055 0.36 -0.9 460,717 - PS417_02055 0.36 -0.7 460,717 - PS417_02055 0.36 -0.1 460,746 + PS417_02055 0.40 -0.5 460,747 - PS417_02055 0.40 -0.0
Or see this region's nucleotide sequence