Strain Fitness in Pseudomonas simiae WCS417 around PS417_00020

Experiment: P. simiae OR Antrim MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00015 and PS417_00020 are separated by 4 nucleotidesPS417_00020 and PS417_00025 are separated by 106 nucleotidesPS417_00025 and PS417_00030 are separated by 12 nucleotides PS417_00015: PS417_00015 - recombinase RecF, at 2,905 to 4,008 _00015 PS417_00020: PS417_00020 - DNA gyrase subunit B, at 4,013 to 6,430 _00020 PS417_00025: PS417_00025 - transcriptional regulator, at 6,537 to 7,259 _00025 PS417_00030: PS417_00030 - hypothetical protein, at 7,272 to 7,457 _00030 Position (kb) 4 5 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3.147 kb on + strand, within PS417_00015at 3.148 kb on - strand, within PS417_00015at 3.148 kb on - strand, within PS417_00015at 3.473 kb on + strand, within PS417_00015at 3.473 kb on + strand, within PS417_00015at 3.493 kb on + strand, within PS417_00015at 3.493 kb on + strand, within PS417_00015at 3.495 kb on + strand, within PS417_00015at 3.495 kb on + strand, within PS417_00015at 3.495 kb on + strand, within PS417_00015at 3.684 kb on + strand, within PS417_00015at 3.801 kb on + strand, within PS417_00015at 3.801 kb on + strand, within PS417_00015at 3.801 kb on + strand, within PS417_00015at 3.801 kb on + strand, within PS417_00015at 3.805 kb on + strand, within PS417_00015at 3.878 kb on + strand, within PS417_00015at 3.878 kb on + strand, within PS417_00015at 3.917 kb on + strandat 6.451 kb on + strandat 6.539 kb on - strandat 6.539 kb on - strandat 6.581 kb on - strandat 6.586 kb on + strandat 6.586 kb on + strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.598 kb on - strandat 6.646 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.712 kb on + strand, within PS417_00025at 6.755 kb on + strand, within PS417_00025at 6.946 kb on + strand, within PS417_00025at 6.947 kb on - strand, within PS417_00025at 6.947 kb on - strandat 7.095 kb on + strand, within PS417_00025at 7.355 kb on + strand, within PS417_00030at 7.356 kb on - strand, within PS417_00030at 7.356 kb on - strand, within PS417_00030at 7.357 kb on + strand, within PS417_00030

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
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3,147 + PS417_00015 0.22 -1.2
3,148 - PS417_00015 0.22 +0.0
3,148 - PS417_00015 0.22 +0.8
3,473 + PS417_00015 0.51 -0.4
3,473 + PS417_00015 0.51 -1.1
3,493 + PS417_00015 0.53 -1.0
3,493 + PS417_00015 0.53 -0.2
3,495 + PS417_00015 0.53 -1.6
3,495 + PS417_00015 0.53 +0.2
3,495 + PS417_00015 0.53 -1.5
3,684 + PS417_00015 0.71 +0.9
3,801 + PS417_00015 0.81 -1.4
3,801 + PS417_00015 0.81 -2.1
3,801 + PS417_00015 0.81 -1.9
3,801 + PS417_00015 0.81 +0.0
3,805 + PS417_00015 0.82 +0.0
3,878 + PS417_00015 0.88 -2.3
3,878 + PS417_00015 0.88 -1.0
3,917 + -0.8
6,451 + -0.4
6,539 - -0.7
6,539 - +1.0
6,581 - +0.0
6,586 + +1.7
6,586 + -1.8
6,587 - -1.6
6,587 - -1.4
6,587 - +1.6
6,587 - -3.5
6,587 - +0.8
6,587 - +0.6
6,598 - +0.1
6,646 + PS417_00025 0.15 -2.1
6,650 + PS417_00025 0.16 +0.2
6,650 + PS417_00025 0.16 +0.0
6,650 + PS417_00025 0.16 +0.6
6,650 + PS417_00025 0.16 -2.1
6,650 + PS417_00025 0.16 -1.0
6,650 + PS417_00025 0.16 -1.2
6,650 + PS417_00025 0.16 -1.9
6,650 + PS417_00025 0.16 -0.9
6,650 + PS417_00025 0.16 -0.4
6,650 + PS417_00025 0.16 -0.2
6,650 + PS417_00025 0.16 +1.2
6,650 + PS417_00025 0.16 -0.4
6,650 + PS417_00025 0.16 -0.4
6,650 + PS417_00025 0.16 -0.4
6,650 + PS417_00025 0.16 -0.2
6,651 - PS417_00025 0.16 +0.0
6,651 - PS417_00025 0.16 -1.2
6,651 - PS417_00025 0.16 -0.4
6,651 - PS417_00025 0.16 -2.1
6,651 - PS417_00025 0.16 -2.5
6,651 - PS417_00025 0.16 +0.6
6,651 - PS417_00025 0.16 +1.2
6,712 + PS417_00025 0.24 +2.0
6,755 + PS417_00025 0.30 +0.7
6,946 + PS417_00025 0.57 -0.4
6,947 - PS417_00025 0.57 -0.4
6,947 - +0.0
7,095 + PS417_00025 0.77 +0.5
7,355 + PS417_00030 0.45 -2.0
7,356 - PS417_00030 0.45 +1.6
7,356 - PS417_00030 0.45 -1.1
7,357 + PS417_00030 0.46 -1.5

Or see this region's nucleotide sequence