Strain Fitness in Pseudomonas simiae WCS417 around PS417_20345

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
4,415,476	+		PS417_20335	0.81	+2.8
4,415,477	-		PS417_20335	0.81	-3.7
4,415,518	+		PS417_20335	0.86	-0.9
4,415,518	+		PS417_20335	0.86	-0.1
4,415,519	-		PS417_20335	0.86	+1.2
4,415,552	+				+0.5
4,415,553	-				-0.2
4,415,609	-				+2.2
4,415,638	-				-0.5
4,415,638	-				-0.8
4,415,702	+				-0.3
4,415,703	-				-0.5
4,415,901	+		PS417_20340	0.65	-1.6
4,415,902	-		PS417_20340	0.65	+0.2
4,415,902	-		PS417_20340	0.65	+0.9
4,416,020	+				-0.9
4,416,021	-				+0.8
4,416,021	-				+0.1
4,416,067	-				-0.5
4,416,126	+				-0.7
4,416,127	-				+0.3
4,416,162	+				+1.2
4,416,173	-				-0.8
4,416,248	-				-1.4
4,416,302	+				-2.0
4,416,303	-				+1.1
4,416,375	-		PS417_20345	0.20	+0.4
4,416,541	+		PS417_20345	0.65	-0.2
4,416,561	+		PS417_20345	0.70	+1.5
4,416,568	+		PS417_20345	0.72	+0.6
4,416,568	+		PS417_20345	0.72	-2.1
4,416,568	+		PS417_20345	0.72	+0.7
4,416,568	+		PS417_20345	0.72	+0.6
4,416,568	+		PS417_20345	0.72	-0.4
4,416,569	-		PS417_20345	0.72	+1.0
4,416,569	-		PS417_20345	0.72	+0.0
4,416,569	-		PS417_20345	0.72	+0.9
4,416,770	+				-1.0
4,416,770	+				-1.4
4,416,933	+				+1.5
4,416,933	+				+1.2
4,416,934	-				+0.3
4,416,934	-				-2.2
4,416,947	+				+1.3
4,416,947	+				+0.3
4,417,057	-		PS417_20350	0.18	+1.3
4,417,057	-		PS417_20350	0.18	-0.6
4,417,079	+				-1.5
4,417,200	+		PS417_20350	0.47	+0.3
4,417,201	-		PS417_20350	0.47	+0.5
4,417,266	+				+5.0
4,417,266	+		PS417_20350	0.60	+0.2
4,417,266	+		PS417_20350	0.60	-1.3
4,417,269	+		PS417_20350	0.61	+1.1
4,417,269	+		PS417_20350	0.61	-0.8
4,417,291	+		PS417_20350	0.65	-0.1
4,417,318	-		PS417_20350	0.71	-0.7
4,417,318	-		PS417_20350	0.71	+0.2
4,417,397	+		PS417_20350	0.87	+2.9
4,417,398	-		PS417_20350	0.87	+0.1
4,417,473	+				+0.3
4,417,474	-				-0.2
4,417,474	-				+0.9
4,417,484	-				-0.1
4,417,506	+				-0.2
4,417,527	+				-0.1
4,417,527	+				+1.0
4,417,549	+				-1.7
4,417,550	-				+0.3
4,417,585	+				-0.0
4,417,585	+				+0.8
4,417,616	+				+0.1
4,417,617	-				+0.6
4,417,617	-				-0.5
4,417,617	-				-0.1
4,417,617	-				+1.2
4,417,627	-				-1.9
4,417,650	+				+1.8