Strain Fitness in Pseudomonas simiae WCS417 around PS417_20205

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
4,388,726	+		PS417_20195	0.72	-0.5
4,388,873	-		PS417_20195	0.82	+0.2
4,389,028	+				-0.8
4,389,028	+				+0.3
4,389,029	-				-0.3
4,389,029	-				-1.1
4,389,289	+				+0.2
4,389,290	-				-2.0
4,389,328	-				+0.6
4,389,398	-				+1.5
4,389,538	-				+1.1
4,389,538	-				-0.2
4,389,547	-				+1.0
4,389,580	+				+1.0
4,389,580	+				+0.4
4,389,580	+				+0.3
4,389,581	-				-0.1
4,389,581	-				-0.8
4,389,583	+				-0.1
4,389,584	-				-0.7
4,389,590	-				+2.0
4,389,600	+				-0.1
4,389,600	+				+0.8
4,389,600	+				-0.3
4,389,600	+				+0.7
4,389,601	-				+0.0
4,389,601	-				+0.4
4,389,627	+				-0.1
4,389,628	-				+0.5
4,389,747	+				+0.2
4,389,902	+		PS417_20205	0.27	-0.5
4,390,224	-		PS417_20205	0.63	-1.8
4,390,265	+		PS417_20205	0.68	-0.7
4,390,265	+		PS417_20205	0.68	+0.9
4,390,266	-		PS417_20205	0.68	-2.4
4,390,266	-		PS417_20205	0.68	-1.3
4,390,266	-		PS417_20205	0.68	-0.1
4,390,356	-		PS417_20205	0.78	-1.1
4,390,421	-		PS417_20205	0.85	-0.3
4,390,630	+				+1.2
4,390,638	+				-0.5
4,390,677	+				-0.8
4,390,678	-				-0.5
4,390,817	+		PS417_20210	0.13	-0.4
4,390,902	+		PS417_20210	0.20	+0.5
4,391,288	+		PS417_20210	0.52	-1.2
4,391,288	+		PS417_20210	0.52	-0.9
4,391,288	+		PS417_20210	0.52	+0.9
4,391,288	+		PS417_20210	0.52	+0.3
4,391,288	+		PS417_20210	0.52	-1.5
4,391,288	+		PS417_20210	0.52	-1.0
4,391,289	-		PS417_20210	0.52	+1.5
4,391,289	-		PS417_20210	0.52	-0.5
4,391,289	-		PS417_20210	0.52	+1.5
4,391,289	-		PS417_20210	0.52	+0.9
4,391,289	-		PS417_20210	0.52	-1.2
4,391,289	-		PS417_20210	0.52	+0.2
4,391,289	-		PS417_20210	0.52	-0.3
4,391,297	+		PS417_20210	0.53	+0.7
4,391,297	+		PS417_20210	0.53	-0.7
4,391,297	+		PS417_20210	0.53	-1.2
4,391,298	-		PS417_20210	0.53	+0.8
4,391,298	-		PS417_20210	0.53	-0.3
4,391,298	-		PS417_20210	0.53	+0.6
4,391,309	+				+0.5
4,391,309	+				-1.5
4,391,310	-		PS417_20210	0.54	-0.7
4,391,310	-		PS417_20210	0.54	+0.0
4,391,310	-		PS417_20210	0.54	+0.1