Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01915 and PS417_01920 are separated by 36 nucleotides PS417_01920 and PS417_01925 are separated by 257 nucleotides PS417_01925 and PS417_01930 are separated by 1 nucleotides
PS417_01915: PS417_01915 - ATP-dependent protease ATP-binding subunit HslU, at 423,674 to 425,011
_01915
PS417_01920: PS417_01920 - ATP-dependent protease subunit HslV, at 425,048 to 425,578
_01920
PS417_01925: PS417_01925 - cell division protein, at 425,836 to 426,537
_01925
PS417_01930: PS417_01930 - arginyl-tRNA synthetase, at 426,539 to 428,275
_01930
Position (kb) 425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 424.743 kb on + strand, within PS417_01915 at 425.012 kb on - strand at 425.012 kb on - strand at 425.464 kb on - strand, within PS417_01920 at 425.684 kb on + strand at 425.684 kb on + strand at 425.684 kb on + strand at 425.685 kb on - strand at 425.764 kb on + strand at 425.765 kb on - strand at 425.781 kb on - strand at 425.781 kb on - strand at 425.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 424,743 + PS417_01915 0.80 -0.4 425,012 - +1.6 425,012 - -1.0 425,464 - PS417_01920 0.78 -0.9 425,684 + -1.0 425,684 + +0.1 425,684 + -2.3 425,685 - +0.1 425,764 + -3.7 425,765 - -3.2 425,781 - -0.3 425,781 - -0.4 425,787 + +0.2
Or see this region's nucleotide sequence