Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01810 and PS417_01815 overlap by 8 nucleotides PS417_01815 and PS417_01820 are separated by 16 nucleotides PS417_01820 and PS417_01825 are separated by 182 nucleotides
PS417_01810: PS417_01810 - ABC transporter permease, at 404,012 to 404,971
_01810
PS417_01815: PS417_01815 - peptide ABC transporter ATP-binding protein, at 404,964 to 405,698
_01815
PS417_01820: PS417_01820 - chemotaxis protein, at 405,715 to 407,622
_01820
PS417_01825: PS417_01825 - chemotaxis protein, at 407,805 to 409,721
_01825
Position (kb) 405
406
407
408 Strain fitness (log2 ratio) -1
0
1 at 404.773 kb on + strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.774 kb on - strand, within PS417_01810 at 404.775 kb on + strand, within PS417_01810 at 404.776 kb on - strand, within PS417_01810 at 404.900 kb on + strand at 404.900 kb on + strand at 404.987 kb on - strand at 404.987 kb on - strand at 405.249 kb on - strand, within PS417_01815 at 405.249 kb on - strand, within PS417_01815 at 405.697 kb on - strand at 405.838 kb on + strand at 405.838 kb on + strand at 406.001 kb on + strand, within PS417_01820 at 406.002 kb on - strand, within PS417_01820 at 406.464 kb on + strand, within PS417_01820 at 406.700 kb on - strand, within PS417_01820 at 406.700 kb on - strand, within PS417_01820 at 406.890 kb on + strand, within PS417_01820 at 406.890 kb on + strand, within PS417_01820 at 406.936 kb on + strand, within PS417_01820 at 407.034 kb on - strand, within PS417_01820 at 407.301 kb on - strand, within PS417_01820 at 407.344 kb on - strand, within PS417_01820 at 407.344 kb on - strand, within PS417_01820 at 407.383 kb on - strand, within PS417_01820 at 407.489 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 404,773 + PS417_01810 0.79 -0.4 404,773 + PS417_01810 0.79 +0.2 404,774 - PS417_01810 0.79 +0.5 404,775 + PS417_01810 0.79 -1.1 404,776 - PS417_01810 0.80 -1.1 404,900 + -0.7 404,900 + -1.5 404,987 - +0.8 404,987 - -0.2 405,249 - PS417_01815 0.39 +1.6 405,249 - PS417_01815 0.39 -0.8 405,697 - -0.4 405,838 + +0.7 405,838 + -0.5 406,001 + PS417_01820 0.15 -1.2 406,002 - PS417_01820 0.15 -0.7 406,464 + PS417_01820 0.39 +1.1 406,700 - PS417_01820 0.52 -1.7 406,700 - PS417_01820 0.52 +0.7 406,890 + PS417_01820 0.62 -0.0 406,890 + PS417_01820 0.62 -0.6 406,936 + PS417_01820 0.64 -0.2 407,034 - PS417_01820 0.69 -0.9 407,301 - PS417_01820 0.83 -0.3 407,344 - PS417_01820 0.85 -1.0 407,344 - PS417_01820 0.85 -1.3 407,383 - PS417_01820 0.87 +1.0 407,489 + +0.3
Or see this region's nucleotide sequence