Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01775 and PS417_01780 are separated by 103 nucleotides PS417_01780 and PS417_01785 overlap by 4 nucleotides PS417_01785 and PS417_01790 are separated by 266 nucleotides
PS417_01775: PS417_01775 - lipase, at 394,841 to 395,770
_01775
PS417_01780: PS417_01780 - proline iminopeptidase, at 395,874 to 396,845
_01780
PS417_01785: PS417_01785 - D-tyrosyl-tRNA(Tyr) deacylase, at 396,842 to 397,279
_01785
PS417_01790: PS417_01790 - glucan biosynthesis protein G, at 397,546 to 399,282
_01790
Position (kb) 395
396
397 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 394.935 kb on - strand, within PS417_01775 at 394.935 kb on - strand, within PS417_01775 at 395.025 kb on - strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.072 kb on + strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.073 kb on - strand, within PS417_01775 at 395.075 kb on - strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.076 kb on + strand, within PS417_01775 at 395.077 kb on - strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.376 kb on + strand, within PS417_01775 at 395.377 kb on - strand, within PS417_01775 at 395.471 kb on + strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.472 kb on - strand, within PS417_01775 at 395.483 kb on + strand at 395.609 kb on + strand, within PS417_01775 at 395.726 kb on + strand at 395.739 kb on - strand at 395.778 kb on - strand at 395.806 kb on + strand at 395.807 kb on - strand at 395.807 kb on - strand at 395.807 kb on - strand at 395.807 kb on - strand at 395.808 kb on + strand at 395.947 kb on - strand at 395.987 kb on - strand, within PS417_01780 at 396.357 kb on + strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.358 kb on - strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.570 kb on + strand, within PS417_01780 at 396.668 kb on + strand, within PS417_01780 at 396.669 kb on - strand, within PS417_01780 at 396.979 kb on - strand, within PS417_01785 at 396.995 kb on + strand, within PS417_01785 at 397.174 kb on - strand at 397.299 kb on + strand at 397.332 kb on - strand at 397.368 kb on + strand at 397.372 kb on + strand at 397.372 kb on + strand at 397.417 kb on + strand at 397.421 kb on + strand at 397.422 kb on - strand at 397.495 kb on + strand at 397.495 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.497 kb on + strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.498 kb on - strand at 397.502 kb on - strand at 397.554 kb on + strand at 397.708 kb on + strand at 397.766 kb on - strand, within PS417_01790
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 394,935 - PS417_01775 0.10 +0.7 394,935 - PS417_01775 0.10 +1.4 395,025 - PS417_01775 0.20 +1.1 395,072 + PS417_01775 0.25 -1.0 395,072 + PS417_01775 0.25 +0.0 395,073 - PS417_01775 0.25 +2.4 395,073 - PS417_01775 0.25 -0.0 395,073 - PS417_01775 0.25 +1.1 395,073 - PS417_01775 0.25 -1.2 395,073 - PS417_01775 0.25 +0.6 395,073 - PS417_01775 0.25 -0.1 395,075 - PS417_01775 0.25 -0.7 395,076 + PS417_01775 0.25 -2.0 395,076 + PS417_01775 0.25 -0.2 395,077 - PS417_01775 0.25 -1.0 395,376 + PS417_01775 0.58 -0.2 395,376 + PS417_01775 0.58 +0.8 395,377 - PS417_01775 0.58 -0.3 395,471 + PS417_01775 0.68 -1.9 395,472 - PS417_01775 0.68 -0.3 395,472 - PS417_01775 0.68 -0.4 395,483 + -0.7 395,609 + PS417_01775 0.83 +0.2 395,726 + +0.2 395,739 - +0.4 395,778 - +0.4 395,806 + +1.6 395,807 - +2.9 395,807 - -1.1 395,807 - -0.1 395,807 - +0.4 395,808 + -0.1 395,947 - +0.0 395,987 - PS417_01780 0.12 -1.0 396,357 + PS417_01780 0.50 -1.0 396,358 - PS417_01780 0.50 -1.3 396,358 - PS417_01780 0.50 -0.2 396,570 + PS417_01780 0.72 +0.8 396,570 + PS417_01780 0.72 -1.7 396,570 + PS417_01780 0.72 -1.0 396,668 + PS417_01780 0.82 -0.4 396,669 - PS417_01780 0.82 -1.4 396,979 - PS417_01785 0.31 +1.1 396,995 + PS417_01785 0.35 +1.3 397,174 - +1.6 397,299 + +1.0 397,332 - -0.2 397,368 + +2.6 397,372 + +1.0 397,372 + +1.0 397,417 + +0.3 397,421 + -1.8 397,422 - +0.7 397,495 + -1.7 397,495 + +2.0 397,497 + +0.0 397,497 + -2.2 397,497 + +0.4 397,497 + -1.4 397,497 + +0.8 397,497 + +0.6 397,497 + -0.1 397,497 + +0.1 397,497 + +0.6 397,497 + +0.2 397,497 + +1.9 397,497 + -1.1 397,497 + -0.8 397,498 - -3.4 397,498 - -0.4 397,498 - +3.9 397,498 - -0.5 397,498 - -0.7 397,498 - -0.1 397,498 - +0.7 397,498 - +0.4 397,498 - -0.2 397,498 - +0.6 397,498 - -1.7 397,498 - +0.4 397,498 - -0.6 397,498 - +0.9 397,498 - +0.8 397,498 - +0.9 397,502 - -1.1 397,554 + +0.5 397,708 + +0.6 397,766 - PS417_01790 0.13 -1.7
Or see this region's nucleotide sequence