Strain Fitness in Pseudomonas simiae WCS417 around PS417_17185

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
3,751,285	+		PS417_17175	0.41	-0.6
3,751,286	-		PS417_17175	0.41	+0.9
3,751,399	+				-0.2
3,751,526	+		PS417_17175	0.64	-1.6
3,751,527	-		PS417_17175	0.64	-0.8
3,751,527	-		PS417_17175	0.64	+2.3
3,751,753	+		PS417_17175	0.86	+0.1
3,751,753	+		PS417_17175	0.86	+0.4
3,751,792	+		PS417_17175	0.90	+0.6
3,751,792	+		PS417_17175	0.90	+0.7
3,751,792	+		PS417_17175	0.90	-0.3
3,751,907	-				+1.1
3,752,027	+				-1.0
3,752,028	-				-0.8
3,752,028	-				+0.1
3,752,107	-				-1.1
3,752,113	-				-0.1
3,752,124	-				-1.6
3,752,145	-				+1.4
3,752,199	+				+0.3
3,752,200	-				-0.5
3,752,200	-				+0.1
3,752,200	-				+1.0
3,752,311	+				+0.6
3,752,311	+				-3.0
3,752,425	-		PS417_17185	0.19	-1.2
3,752,447	-		PS417_17185	0.21	-0.6
3,752,605	-		PS417_17185	0.37	+2.4
3,752,611	+		PS417_17185	0.37	-1.2
3,752,612	-		PS417_17185	0.38	+1.3
3,752,671	+		PS417_17185	0.43	-0.4
3,752,695	+		PS417_17185	0.46	+1.2
3,752,695	+		PS417_17185	0.46	-0.2
3,752,695	+		PS417_17185	0.46	-0.6
3,752,695	+		PS417_17185	0.46	-0.5
3,752,698	+		PS417_17185	0.46	-0.2
3,752,773	+				-1.2
3,752,774	-		PS417_17185	0.53	+0.5
3,752,774	-		PS417_17185	0.53	+0.1
3,752,908	+		PS417_17185	0.67	-1.6
3,752,908	+		PS417_17185	0.67	+0.6
3,752,909	-		PS417_17185	0.67	+0.1
3,752,909	-		PS417_17185	0.67	+1.1
3,753,221	-				-0.5
3,753,244	+				-0.4
3,753,267	-				-1.0
3,753,267	-				-1.7
3,753,425	-		PS417_17190	0.29	-0.0
3,753,520	-		PS417_17190	0.49	-1.4
3,753,562	+		PS417_17190	0.58	-1.0
3,753,646	+		PS417_17190	0.76	-2.0
3,753,794	+				-0.8
3,753,795	-				-0.1
3,753,797	+				-0.3
3,753,798	-				-1.3
3,753,798	-				-0.4
3,753,798	-				+1.0
3,754,086	-				-2.4
3,754,093	+				+1.4
3,754,094	-				-0.4
3,754,094	-				+1.0
3,754,094	-				+1.2
3,754,094	-				-1.6
3,754,094	-				-1.5
3,754,235	+		PS417_17195	0.12	+1.3
3,754,236	-		PS417_17195	0.12	-0.4
3,754,236	-		PS417_17195	0.12	-1.0
3,754,236	-		PS417_17195	0.12	+0.3