Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16635 and PS417_16640 are separated by 187 nucleotides PS417_16640 and PS417_16645 overlap by 11 nucleotides PS417_16645 and PS417_16650 are separated by 61 nucleotides PS417_16650 and PS417_16655 are separated by 133 nucleotides
PS417_16635: PS417_16635 - NADH:ubiquinone oxidoreductase subunit N, at 3,636,090 to 3,637,553
_16635
PS417_16640: PS417_16640 - toxin, at 3,637,741 to 3,638,142
_16640
PS417_16645: PS417_16645 - XRE family transcriptional regulator, at 3,638,132 to 3,638,446
_16645
PS417_16650: PS417_16650 - hypothetical protein, at 3,638,508 to 3,639,260
_16650
PS417_16655: PS417_16655 - N-hydroxyarylamine O-acetyltransferase, at 3,639,394 to 3,640,221
_16655
Position (kb) 3638
3639
3640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3637.700 kb on - strand at 3637.715 kb on + strand at 3637.802 kb on + strand, within PS417_16640 at 3637.802 kb on + strand, within PS417_16640 at 3637.803 kb on - strand, within PS417_16640 at 3637.807 kb on - strand, within PS417_16640 at 3637.843 kb on + strand, within PS417_16640 at 3637.997 kb on - strand, within PS417_16640 at 3638.312 kb on + strand, within PS417_16645 at 3638.312 kb on + strand, within PS417_16645 at 3638.313 kb on - strand, within PS417_16645 at 3638.313 kb on - strand, within PS417_16645 at 3638.591 kb on + strand, within PS417_16650 at 3638.592 kb on - strand, within PS417_16650 at 3638.592 kb on - strand, within PS417_16650 at 3638.609 kb on - strand, within PS417_16650 at 3638.803 kb on + strand at 3638.803 kb on + strand, within PS417_16650 at 3638.840 kb on + strand, within PS417_16650 at 3639.001 kb on + strand, within PS417_16650 at 3639.026 kb on - strand, within PS417_16650 at 3639.029 kb on + strand, within PS417_16650 at 3639.030 kb on - strand, within PS417_16650 at 3639.030 kb on - strand, within PS417_16650 at 3639.053 kb on + strand, within PS417_16650 at 3639.068 kb on - strand, within PS417_16650 at 3639.249 kb on + strand at 3639.396 kb on - strand at 3639.396 kb on - strand at 3639.548 kb on + strand, within PS417_16655 at 3639.549 kb on - strand, within PS417_16655 at 3639.641 kb on + strand, within PS417_16655 at 3639.641 kb on + strand, within PS417_16655 at 3639.642 kb on - strand, within PS417_16655 at 3639.642 kb on - strand, within PS417_16655 at 3639.642 kb on - strand at 3639.642 kb on - strand, within PS417_16655 at 3639.695 kb on + strand, within PS417_16655 at 3639.695 kb on + strand, within PS417_16655 at 3639.695 kb on + strand, within PS417_16655 at 3639.695 kb on + strand, within PS417_16655 at 3639.696 kb on - strand, within PS417_16655 at 3639.857 kb on + strand, within PS417_16655 at 3639.858 kb on - strand, within PS417_16655 at 3640.256 kb on + strand at 3640.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 3,637,700 - -0.6 3,637,715 + -2.8 3,637,802 + PS417_16640 0.15 +0.6 3,637,802 + PS417_16640 0.15 -0.4 3,637,803 - PS417_16640 0.15 +1.3 3,637,807 - PS417_16640 0.16 -1.2 3,637,843 + PS417_16640 0.25 +0.8 3,637,997 - PS417_16640 0.64 -0.2 3,638,312 + PS417_16645 0.57 -0.2 3,638,312 + PS417_16645 0.57 -1.1 3,638,313 - PS417_16645 0.57 +0.9 3,638,313 - PS417_16645 0.57 -2.8 3,638,591 + PS417_16650 0.11 +0.3 3,638,592 - PS417_16650 0.11 +0.4 3,638,592 - PS417_16650 0.11 -0.2 3,638,609 - PS417_16650 0.13 +0.6 3,638,803 + +0.4 3,638,803 + PS417_16650 0.39 +0.6 3,638,840 + PS417_16650 0.44 +0.2 3,639,001 + PS417_16650 0.65 +1.6 3,639,026 - PS417_16650 0.69 +0.2 3,639,029 + PS417_16650 0.69 +1.8 3,639,030 - PS417_16650 0.69 -1.8 3,639,030 - PS417_16650 0.69 +0.0 3,639,053 + PS417_16650 0.72 +0.5 3,639,068 - PS417_16650 0.74 -2.2 3,639,249 + -0.1 3,639,396 - -0.5 3,639,396 - +2.3 3,639,548 + PS417_16655 0.19 -2.0 3,639,549 - PS417_16655 0.19 +0.2 3,639,641 + PS417_16655 0.30 +0.3 3,639,641 + PS417_16655 0.30 +0.4 3,639,642 - PS417_16655 0.30 -0.6 3,639,642 - PS417_16655 0.30 -0.2 3,639,642 - +1.4 3,639,642 - PS417_16655 0.30 -0.1 3,639,695 + PS417_16655 0.36 -2.4 3,639,695 + PS417_16655 0.36 +0.5 3,639,695 + PS417_16655 0.36 -1.2 3,639,695 + PS417_16655 0.36 -2.2 3,639,696 - PS417_16655 0.36 -0.0 3,639,857 + PS417_16655 0.56 -0.2 3,639,858 - PS417_16655 0.56 -0.5 3,640,256 + -0.6 3,640,256 + -1.0
Or see this region's nucleotide sequence