Strain Fitness in Pseudomonas simiae WCS417 around PS417_15240

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
3,341,071	+				+1.0
3,341,071	+				-1.2
3,341,071	+				-0.6
3,341,071	+				+0.9
3,341,071	+				-0.3
3,341,071	+				+0.4
3,341,119	-				+0.8
3,341,541	+		PS417_15235	0.44	+0.4
3,341,655	-		PS417_15235	0.57	-1.7
3,341,913	+		PS417_15235	0.86	+0.8
3,341,914	-		PS417_15235	0.86	+1.5
3,341,952	+		PS417_15235	0.90	+0.6
3,342,056	+				+1.3
3,342,056	+				+1.1
3,342,056	+				-1.7
3,342,057	-				+0.9
3,342,057	-				+0.2
3,342,301	-		PS417_15240	0.29	-0.9
3,342,328	+		PS417_15240	0.32	-1.1
3,342,432	+		PS417_15240	0.45	-0.5
3,342,432	+		PS417_15240	0.45	+0.5
3,342,432	+		PS417_15240	0.45	-0.5
3,342,433	-		PS417_15240	0.45	-0.5
3,342,433	-		PS417_15240	0.45	-0.2
3,342,513	+		PS417_15240	0.55	-1.5
3,342,602	-				-0.2
3,342,786	+		PS417_15240	0.87	+0.1
3,342,786	+		PS417_15240	0.87	-2.7
3,342,787	-		PS417_15240	0.88	+0.3
3,342,787	-		PS417_15240	0.88	-0.6
3,342,888	+				-0.3
3,342,889	-				-0.6
3,342,961	-				+0.6
3,343,165	-		PS417_15245	0.13	+0.6
3,343,165	-		PS417_15245	0.13	+0.2
3,343,203	+		PS417_15245	0.15	-1.0
3,343,204	-		PS417_15245	0.15	-1.0
3,343,204	-				+2.3
3,343,372	+		PS417_15245	0.23	-0.6
3,343,750	-		PS417_15245	0.42	-0.8
3,343,794	+		PS417_15245	0.44	-1.5
3,343,795	-		PS417_15245	0.44	+0.0
3,343,795	-				+0.3
3,343,804	-		PS417_15245	0.44	+0.1