Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14900 and PS417_14905 overlap by 1 nucleotides PS417_14905 and PS417_14910 are separated by 149 nucleotides
PS417_14900: PS417_14900 - C4-dicarboxylate ABC transporter permease, at 3,253,944 to 3,255,224
_14900
PS417_14905: PS417_14905 - C4-dicarboxylate ABC transporter, at 3,255,224 to 3,255,856
_14905
PS417_14910: PS417_14910 - C4-dicarboxylate ABC transporter, at 3,256,006 to 3,256,989
_14910
Position (kb)
3255
3256 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3254.458 kb on + strand, within PS417_14900 at 3254.459 kb on - strand, within PS417_14900 at 3254.533 kb on + strand, within PS417_14900 at 3254.656 kb on + strand, within PS417_14900 at 3254.656 kb on + strand, within PS417_14900 at 3254.656 kb on + strand, within PS417_14900 at 3254.656 kb on + strand, within PS417_14900 at 3254.657 kb on - strand, within PS417_14900 at 3254.750 kb on - strand, within PS417_14900 at 3255.063 kb on - strand, within PS417_14900 at 3255.063 kb on - strand at 3255.064 kb on + strand, within PS417_14900 at 3255.064 kb on + strand, within PS417_14900 at 3255.064 kb on + strand at 3255.195 kb on + strand at 3255.483 kb on + strand, within PS417_14905 at 3255.768 kb on + strand, within PS417_14905 at 3255.880 kb on + strand at 3255.880 kb on + strand at 3256.096 kb on + strand at 3256.290 kb on - strand, within PS417_14910 at 3256.290 kb on - strand, within PS417_14910 at 3256.322 kb on + strand, within PS417_14910 at 3256.323 kb on - strand, within PS417_14910 at 3256.356 kb on - strand, within PS417_14910 at 3256.356 kb on - strand, within PS417_14910 at 3256.409 kb on + strand, within PS417_14910 at 3256.486 kb on + strand, within PS417_14910 at 3256.486 kb on + strand, within PS417_14910 at 3256.568 kb on + strand, within PS417_14910 at 3256.680 kb on - strand, within PS417_14910 at 3256.700 kb on + strand, within PS417_14910 at 3256.700 kb on + strand, within PS417_14910 at 3256.700 kb on + strand, within PS417_14910 at 3256.700 kb on + strand, within PS417_14910
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 3,254,458 + PS417_14900 0.40 -0.5 3,254,459 - PS417_14900 0.40 -0.5 3,254,533 + PS417_14900 0.46 -0.6 3,254,656 + PS417_14900 0.56 -0.7 3,254,656 + PS417_14900 0.56 -0.7 3,254,656 + PS417_14900 0.56 -0.1 3,254,656 + PS417_14900 0.56 +0.6 3,254,657 - PS417_14900 0.56 -0.7 3,254,750 - PS417_14900 0.63 -0.7 3,255,063 - PS417_14900 0.87 -0.4 3,255,063 - +1.3 3,255,064 + PS417_14900 0.87 -1.1 3,255,064 + PS417_14900 0.87 -0.2 3,255,064 + -1.2 3,255,195 + -0.7 3,255,483 + PS417_14905 0.41 -0.4 3,255,768 + PS417_14905 0.86 +1.9 3,255,880 + +0.5 3,255,880 + +0.6 3,256,096 + +0.0 3,256,290 - PS417_14910 0.29 -1.2 3,256,290 - PS417_14910 0.29 -0.5 3,256,322 + PS417_14910 0.32 +0.3 3,256,323 - PS417_14910 0.32 -0.6 3,256,356 - PS417_14910 0.36 +0.2 3,256,356 - PS417_14910 0.36 -1.1 3,256,409 + PS417_14910 0.41 +0.1 3,256,486 + PS417_14910 0.49 +0.4 3,256,486 + PS417_14910 0.49 -2.0 3,256,568 + PS417_14910 0.57 +1.2 3,256,680 - PS417_14910 0.68 -1.7 3,256,700 + PS417_14910 0.71 +0.5 3,256,700 + PS417_14910 0.71 +2.1 3,256,700 + PS417_14910 0.71 -1.0 3,256,700 + PS417_14910 0.71 -1.3
Or see this region's nucleotide sequence