Strain Fitness in Pseudomonas simiae WCS417 around PS417_13520

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,978,966	+				+0.7
2,978,966	+				+0.1
2,978,967	-				+0.3
2,979,100	-		PS417_13515	0.12	+0.0
2,979,100	-		PS417_13515	0.12	-0.9
2,979,286	-		PS417_13515	0.32	-0.4
2,979,331	-		PS417_13515	0.36	-0.1
2,979,488	-		PS417_13515	0.53	-0.6
2,979,665	+				+3.4
2,979,676	-		PS417_13515	0.73	+0.7
2,979,721	+		PS417_13515	0.77	+0.4
2,979,721	+		PS417_13515	0.77	-0.8
2,979,722	-		PS417_13515	0.78	+0.4
2,979,722	-		PS417_13515	0.78	-0.0
2,979,846	+				+0.6
2,979,934	+				-0.3
2,979,934	+				-0.4
2,979,935	-				-0.7
2,979,935	-				-0.9
2,980,154	+		PS417_13520	0.15	+0.9
2,980,154	+		PS417_13520	0.15	-0.7
2,980,154	+				-0.2
2,980,155	-		PS417_13520	0.15	-0.0
2,980,391	+		PS417_13520	0.32	+0.6
2,980,621	+		PS417_13520	0.49	+0.4
2,980,761	-		PS417_13520	0.58	-1.5
2,980,841	+				+1.1
2,980,841	+		PS417_13520	0.64	+0.8
2,980,842	-		PS417_13520	0.64	-1.0
2,980,883	+		PS417_13520	0.67	-0.9
2,980,884	-		PS417_13520	0.67	+1.6
2,980,884	-		PS417_13520	0.67	+0.6
2,980,886	+		PS417_13520	0.67	+0.9
2,980,886	+		PS417_13520	0.67	+0.9
2,980,887	-				-1.0
2,980,887	-		PS417_13520	0.67	+1.5
2,980,887	-		PS417_13520	0.67	+0.4
2,980,935	-				+2.9
2,980,935	-		PS417_13520	0.71	-0.1
2,980,935	-		PS417_13520	0.71	-0.1
2,981,042	+		PS417_13520	0.78	+0.6
2,981,042	+		PS417_13520	0.78	+1.0
2,981,042	+				-0.2
2,981,042	+		PS417_13520	0.78	-0.7
2,981,042	+		PS417_13520	0.78	-1.6
2,981,043	-		PS417_13520	0.78	+0.8
2,981,043	-		PS417_13520	0.78	-1.1
2,981,043	-				+1.0
2,981,043	-		PS417_13520	0.78	+0.7
2,981,181	-		PS417_13520	0.88	+0.1
2,981,181	-		PS417_13520	0.88	-0.2
2,981,181	-		PS417_13520	0.88	-0.0
2,981,449	+				+0.6
2,981,801	-		PS417_13525	0.19	-0.8
2,981,845	-		PS417_13525	0.27	-3.0
2,981,854	+		PS417_13525	0.29	-0.1
2,982,014	-		PS417_13525	0.58	-0.9
2,982,277	+				+0.1
2,982,278	-				-0.5
2,982,278	-				-0.3
2,982,309	-				+0.4