Strain Fitness in Pseudomonas simiae WCS417 around PS417_13370

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,937,591	-				+2.9
2,937,591	-				+2.5
2,937,620	-				-1.3
2,937,764	+		PS417_13365	0.24	-1.0
2,937,977	+		PS417_13365	0.46	+0.1
2,937,978	-		PS417_13365	0.46	-1.6
2,938,088	+		PS417_13365	0.58	-2.5
2,938,089	-		PS417_13365	0.58	+1.1
2,938,089	-		PS417_13365	0.58	-0.1
2,938,089	-		PS417_13365	0.58	-0.1
2,938,089	-		PS417_13365	0.58	+0.0
2,938,092	+		PS417_13365	0.58	+0.6
2,938,098	+		PS417_13365	0.59	-0.6
2,938,099	-		PS417_13365	0.59	-1.4
2,938,124	-		PS417_13365	0.62	+0.2
2,938,124	-		PS417_13365	0.62	+2.2
2,938,133	-		PS417_13365	0.63	-2.4
2,938,174	+		PS417_13365	0.67	-0.5
2,938,174	+		PS417_13365	0.67	-0.2
2,938,174	+		PS417_13365	0.67	-1.0
2,938,174	+		PS417_13365	0.67	+0.5
2,938,174	+		PS417_13365	0.67	+0.2
2,938,174	+		PS417_13365	0.67	-0.2
2,938,174	+		PS417_13365	0.67	-0.2
2,938,175	-		PS417_13365	0.67	+0.5
2,938,175	-		PS417_13365	0.67	-0.4
2,938,175	-		PS417_13365	0.67	-0.2
2,938,175	-		PS417_13365	0.67	+0.5
2,938,178	+		PS417_13365	0.68	-1.1
2,938,179	-		PS417_13365	0.68	+0.4
2,938,224	+		PS417_13365	0.73	-0.2
2,938,254	-		PS417_13365	0.76	-0.0
2,938,268	+		PS417_13365	0.77	+0.1
2,938,268	+		PS417_13365	0.77	-0.6
2,938,268	+		PS417_13365	0.77	+0.2
2,938,269	-		PS417_13365	0.77	+1.4
2,938,274	+		PS417_13365	0.78	-0.5
2,938,274	+		PS417_13365	0.78	+0.7
2,938,274	+		PS417_13365	0.78	+1.4
2,938,275	-		PS417_13365	0.78	-1.0
2,938,275	-		PS417_13365	0.78	-1.4
2,938,275	-		PS417_13365	0.78	+0.1
2,938,275	-				-0.4
2,938,275	-		PS417_13365	0.78	+0.7
2,938,337	+		PS417_13365	0.85	-0.1
2,938,338	-		PS417_13365	0.85	-0.6
2,938,339	+		PS417_13365	0.85	+0.4
2,938,340	-				+1.9
2,938,449	+				-0.6
2,938,490	-				-0.4
2,938,504	+				-0.2
2,938,505	-				-2.7
2,938,643	+		PS417_13370	0.16	+0.4
2,938,643	+		PS417_13370	0.16	-0.0
2,938,644	-		PS417_13370	0.16	-2.4
2,938,644	-		PS417_13370	0.16	-0.1
2,938,856	+		PS417_13370	0.42	+1.4
2,938,894	+		PS417_13370	0.46	-0.8
2,938,897	+		PS417_13370	0.47	-0.1
2,938,897	+		PS417_13370	0.47	+1.7
2,938,898	-		PS417_13370	0.47	+1.2
2,938,905	-		PS417_13370	0.47	-1.0
2,938,919	+		PS417_13370	0.49	+0.7
2,938,920	-		PS417_13370	0.49	-1.6
2,938,921	+		PS417_13370	0.49	-1.6
2,938,922	-		PS417_13370	0.50	+2.7
2,938,922	-		PS417_13370	0.50	+0.5
2,938,922	-		PS417_13370	0.50	+0.2
2,938,922	-		PS417_13370	0.50	+0.7
2,938,941	-		PS417_13370	0.52	+1.7
2,938,950	-		PS417_13370	0.53	-0.1
2,938,950	-		PS417_13370	0.53	-0.5
2,939,013	+		PS417_13370	0.60	+0.9
2,939,013	+		PS417_13370	0.60	+0.1
2,939,013	+		PS417_13370	0.60	+0.2
2,939,116	+		PS417_13370	0.73	+1.9
2,939,304	-				-0.6
2,939,359	+				-0.7
2,939,360	-				-0.8
2,939,361	+				+0.0
2,939,361	+				-0.1
2,939,362	-				+0.1
2,939,362	-				-1.6
2,939,363	+				-1.4
2,939,363	+				-2.0
2,939,363	+				-0.1
2,939,363	+				-0.6
2,939,364	-				-0.5
2,939,364	-				-0.4
2,939,364	-				+0.4
2,939,364	-				+0.7
2,939,374	+				+0.9
2,939,380	-				-0.0
2,939,402	+				-0.1
2,939,403	-				-1.6
2,939,419	+				-2.1
2,939,420	-				+1.0
2,939,420	-				+2.4
2,939,436	-				+0.4
2,939,509	-				-0.3
2,939,509	-				-0.4
2,939,513	-				-0.6
2,939,682	+				+0.1
2,939,701	+				+3.4
2,939,701	+				+0.0
2,939,809	+				-0.1
2,939,923	+		PS417_13375	0.10	+1.1
2,939,924	-		PS417_13375	0.10	-0.3
2,939,924	-		PS417_13375	0.10	+3.7
2,939,924	-		PS417_13375	0.10	+0.7
2,940,080	+		PS417_13375	0.27	+0.2
2,940,080	+		PS417_13375	0.27	-0.2
2,940,080	+		PS417_13375	0.27	-0.3
2,940,080	+		PS417_13375	0.27	-1.6
2,940,080	+		PS417_13375	0.27	-1.1
2,940,081	-		PS417_13375	0.27	+0.6
2,940,280	-		PS417_13375	0.49	-0.6
2,940,333	+		PS417_13375	0.55	+1.7
2,940,334	-		PS417_13375	0.55	+0.3
2,940,334	-		PS417_13375	0.55	-1.0