Strain Fitness in Pseudomonas simiae WCS417 around PS417_12615

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,744,931	+				+3.4
2,744,931	+		PS417_12605	0.69	-0.2
2,745,104	+				-2.1
2,745,104	+				+0.5
2,745,105	-				-0.5
2,745,105	-				-0.0
2,745,247	+		PS417_12610	0.22	+0.1
2,745,247	+		PS417_12610	0.22	+0.3
2,745,397	-		PS417_12610	0.51	-0.1
2,745,583	+				+0.4
2,745,584	-		PS417_12610	0.87	+0.2
2,745,652	+				+1.2
2,745,652	+				-1.8
2,745,652	+				-0.2
2,745,653	-				+0.1
2,745,653	-				-0.9
2,745,653	-				-0.6
2,745,684	-				+1.4
2,745,684	-				-0.5
2,745,684	-				-0.1
2,745,777	+				-0.6
2,745,777	+				+0.2
2,745,784	+				-0.9
2,745,784	+				-0.1
2,745,784	+				-0.4
2,745,784	+				-0.7
2,745,784	+				-0.1
2,745,784	+				+2.3
2,745,785	-				+0.2
2,745,785	-				-0.1
2,745,785	-				+0.7
2,745,785	-				+0.4
2,745,785	-				+0.0
2,745,785	-				+0.3
2,745,785	-				-0.5
2,745,808	+				+0.1
2,745,808	+				-0.1
2,745,943	-		PS417_12615	0.23	-0.3
2,746,095	+		PS417_12615	0.52	-0.6
2,746,095	+		PS417_12615	0.52	-0.4
2,746,198	-		PS417_12615	0.72	-0.6
2,746,198	-		PS417_12615	0.72	-0.6
2,746,312	+				+1.7
2,746,334	-				+0.3
2,746,347	-				-0.6
2,746,362	+				-0.4
2,746,491	+				-0.7
2,746,491	+				-0.0
2,746,492	-				-0.1
2,746,492	-				+1.1
2,746,492	-				-1.3
2,746,946	-		PS417_12620	0.60	+0.7
2,747,035	-		PS417_12620	0.72	-0.1
2,747,035	-		PS417_12620	0.72	-0.8
2,747,228	+				+5.0
2,747,228	+				-0.9
2,747,228	+				+0.2
2,747,229	-				-0.1
2,747,229	-				-0.9
2,747,229	-				+0.2
2,747,229	-				-0.2
2,747,278	-				+1.4
2,747,280	-				-0.4
2,747,323	+				-1.5
2,747,335	+				+2.4
2,747,336	-				+1.6
2,747,336	-				-0.7