Strain Fitness in Pseudomonas simiae WCS417 around PS417_12510

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,717,817	+		PS417_12500	0.57	-0.3
2,717,818	-		PS417_12500	0.57	+0.1
2,717,818	-		PS417_12500	0.57	+1.2
2,717,819	+		PS417_12500	0.57	-0.0
2,717,819	+		PS417_12500	0.57	-0.3
2,717,820	-		PS417_12500	0.57	+0.4
2,717,820	-		PS417_12500	0.57	+0.2
2,717,909	+		PS417_12500	0.66	-0.4
2,717,910	-		PS417_12500	0.66	-0.0
2,717,993	+		PS417_12500	0.74	-2.7
2,718,275	+				-0.7
2,718,336	-				+0.6
2,718,391	+				-0.9
2,718,391	+				+2.6
2,718,391	+				-0.5
2,718,391	+				+0.4
2,718,392	-				+0.4
2,718,392	-				+0.1
2,718,484	+		PS417_12505	0.34	-1.2
2,718,485	-		PS417_12505	0.34	-0.8
2,718,528	-		PS417_12505	0.50	-0.9
2,718,605	+		PS417_12505	0.79	-1.6
2,718,605	+		PS417_12505	0.79	-0.5
2,718,606	-		PS417_12505	0.79	+1.6
2,718,606	-		PS417_12505	0.79	-0.7
2,718,719	-				-0.7
2,718,764	+				+0.2
2,718,764	+				+1.1
2,718,765	-				+0.4
2,718,842	+				-0.8
2,718,842	+				-0.7
2,718,843	-				+0.6
2,718,898	-				-0.6
2,718,998	+				+1.0
2,719,113	+				+0.7
2,719,113	+				+0.2
2,719,113	+				+0.6
2,719,113	+				+1.3
2,719,114	-				-1.4
2,719,114	-				-0.3
2,719,114	-				+0.4
2,719,114	-				+0.6
2,719,114	-				+1.7
2,719,114	-				-0.2
2,719,117	+				-0.5
2,719,117	+				+0.3
2,719,117	+				-0.1
2,719,118	-				+1.8
2,719,222	+				-0.7
2,719,222	+				+0.2
2,719,222	+				+0.7
2,719,222	+				-0.3
2,719,537	+		PS417_12510	0.16	+0.0
2,719,538	-		PS417_12510	0.16	-0.7
2,719,589	-		PS417_12510	0.17	-1.3
2,719,660	+		PS417_12510	0.18	-0.3
2,719,660	+		PS417_12510	0.18	-0.9
2,719,660	+		PS417_12510	0.18	-0.8
2,719,661	-		PS417_12510	0.18	+0.7
2,719,694	-		PS417_12510	0.19	-0.9
2,719,694	-		PS417_12510	0.19	-0.4
2,719,709	-		PS417_12510	0.19	-0.7
2,719,867	+		PS417_12510	0.22	-2.9
2,719,899	+		PS417_12510	0.23	+0.3
2,719,899	+		PS417_12510	0.23	+2.1
2,719,900	-		PS417_12510	0.23	-1.8
2,720,171	+		PS417_12510	0.28	+0.5
2,720,173	+		PS417_12510	0.28	-1.2
2,720,173	+		PS417_12510	0.28	-0.2
2,720,173	+		PS417_12510	0.28	-0.1
2,720,173	+		PS417_12510	0.28	-0.2
2,720,271	+		PS417_12510	0.30	-1.0
2,720,364	+		PS417_12510	0.32	-0.9
2,720,438	+		PS417_12510	0.34	+1.4
2,720,661	-		PS417_12510	0.38	+0.1
2,720,734	+		PS417_12510	0.39	-0.3
2,720,800	-		PS417_12510	0.41	-1.6
2,720,869	+		PS417_12510	0.42	-0.0
2,720,901	-		PS417_12510	0.43	+1.4
2,721,070	+				+1.1
2,721,071	-		PS417_12510	0.46	-0.7
2,721,130	+		PS417_12510	0.47	+0.6
2,721,130	+		PS417_12510	0.47	-0.1
2,721,136	+		PS417_12510	0.47	-0.8
2,721,177	+		PS417_12510	0.48	-0.6
2,721,177	+		PS417_12510	0.48	-0.8
2,721,312	+				-0.2
2,721,367	+		PS417_12510	0.52	+1.4
2,721,367	+		PS417_12510	0.52	-0.9
2,721,367	+		PS417_12510	0.52	-0.4
2,721,368	-		PS417_12510	0.52	-0.3
2,721,368	-		PS417_12510	0.52	+0.0
2,721,439	+		PS417_12510	0.53	+0.1
2,721,440	-		PS417_12510	0.53	+2.1
2,721,695	-		PS417_12510	0.58	+0.1
2,721,803	+		PS417_12510	0.60	+1.1
2,721,803	+		PS417_12510	0.60	+0.4
2,722,007	-		PS417_12510	0.64	-0.4
2,722,144	+		PS417_12510	0.67	-1.6
2,722,144	+		PS417_12510	0.67	+0.3
2,722,145	-		PS417_12510	0.67	+0.2
2,722,603	+		PS417_12510	0.76	+0.9
2,722,603	+				+1.2
2,722,603	+		PS417_12510	0.76	-0.5
2,722,603	+		PS417_12510	0.76	+2.0
2,722,618	+		PS417_12510	0.76	+0.0
2,722,703	-		PS417_12510	0.78	-1.2
2,722,795	-		PS417_12510	0.80	-1.6
2,722,795	-		PS417_12510	0.80	+0.3
2,722,795	-		PS417_12510	0.80	-1.2
2,723,081	-		PS417_12510	0.85	-0.2
2,723,131	+		PS417_12510	0.86	-2.8
2,723,383	-				+0.5
2,723,517	+				-1.6
2,723,518	-				+1.0
2,723,518	-				-0.6
2,723,584	+				-1.7
2,723,584	+				-0.5
2,723,584	+				+0.2
2,723,585	-				-0.3
2,723,585	-				+1.2
2,723,824	-				+0.5
2,723,835	-				+0.6
2,723,835	-				+0.1
2,723,835	-				-0.2
2,723,922	+				-0.8
2,723,922	+				+0.3
2,723,926	+				-0.5
2,723,927	-				-0.5
2,723,927	-				-0.2
2,723,927	-				+1.0
2,723,927	-				-0.0
2,723,927	-				+0.3
2,723,927	-				-1.2
2,723,983	+				-0.7
2,723,984	-				-0.3
2,724,007	-				-0.2
2,724,007	-				+0.3
2,724,093	+				+1.7
2,724,163	+		PS417_12515	0.11	+0.3
2,724,235	-		PS417_12515	0.18	+0.2
2,724,235	-		PS417_12515	0.18	-0.3