Strain Fitness in Pseudomonas simiae WCS417 around PS417_11895

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,589,867	+		PS417_11890	0.41	+1.2
2,589,867	+		PS417_11890	0.41	+1.1
2,589,867	+		PS417_11890	0.41	+1.9
2,589,868	-		PS417_11890	0.41	-2.3
2,589,936	+		PS417_11890	0.46	+1.5
2,589,936	+		PS417_11890	0.46	+1.5
2,590,084	+		PS417_11890	0.55	+1.6
2,590,359	+		PS417_11890	0.73	+0.4
2,590,584	+				+0.6
2,590,781	+				-0.2
2,590,781	+				+1.3
2,590,782	-				-2.1
2,590,788	+				+1.1
2,590,789	-				-0.7
2,590,805	-				-0.2
2,590,816	-				+0.7
2,590,822	+				+1.2
2,591,300	+		PS417_11895	0.48	+0.9
2,591,300	+		PS417_11895	0.48	+2.3
2,591,300	+		PS417_11895	0.48	+1.2
2,591,301	-		PS417_11895	0.48	-0.1
2,591,339	+		PS417_11895	0.52	+0.5
2,591,404	+		PS417_11895	0.59	+0.2
2,591,435	+		PS417_11895	0.62	+1.1
2,591,436	-		PS417_11895	0.62	-3.0
2,591,436	-		PS417_11895	0.62	-1.5
2,591,436	-		PS417_11895	0.62	+1.4
2,591,436	-		PS417_11895	0.62	-0.5
2,591,436	-		PS417_11895	0.62	-0.4
2,591,441	+		PS417_11895	0.62	+1.2
2,591,441	+		PS417_11895	0.62	+0.7
2,591,441	+		PS417_11895	0.62	+1.2
2,591,442	-		PS417_11895	0.62	+0.1
2,591,442	-		PS417_11895	0.62	-0.1
2,591,442	-		PS417_11895	0.62	+0.1
2,591,513	+		PS417_11895	0.69	+0.6
2,591,514	-		PS417_11895	0.69	+0.6
2,591,741	+				-0.4
2,591,742	-				-0.2
2,591,742	-				+0.0
2,591,889	-				-2.7
2,591,889	-				+0.8
2,591,914	-				+0.5
2,591,984	+				-0.2
2,591,984	+				-0.0
2,591,984	+				-0.2
2,591,985	-				+1.8
2,591,985	-				+3.0
2,591,985	-				+1.5
2,591,985	-				+1.8
2,591,985	-				+1.6
2,591,985	-				+1.5
2,591,985	-				+1.2
2,591,985	-				+0.8
2,591,985	-				+1.3
2,591,986	+				-0.8
2,591,987	-				+1.6
2,591,987	-				+1.8
2,591,988	+				-0.6
2,591,988	+				+0.2
2,591,989	-				+1.9
2,591,989	-				+1.3
2,591,989	-				-0.6
2,591,989	-				+0.9
2,591,989	-				+1.0
2,591,989	-				-0.3
2,592,015	-				+1.7
2,592,017	-				-0.4
2,592,121	-				+3.5
2,592,290	+				+3.7
2,592,290	+				+3.2
2,592,290	+				+4.5
2,592,290	+				+3.9
2,592,291	-				+4.3
2,592,291	-				+3.4
2,592,291	-				+3.3
2,592,442	+		PS417_11900	0.47	+3.4
2,592,511	+		PS417_11900	0.64	+3.8
2,592,512	-		PS417_11900	0.64	+3.7
2,592,596	+		PS417_11900	0.85	+3.5
2,592,597	-		PS417_11900	0.85	+3.3
2,592,741	-				+2.1
2,592,775	+				+1.4
2,592,775	+				+0.6