Strain Fitness in Pseudomonas simiae WCS417 around PS417_11850

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,578,196	-		PS417_11845	0.46	-1.6
2,578,196	-		PS417_11845	0.46	+0.6
2,578,196	-		PS417_11845	0.46	+0.3
2,578,199	+		PS417_11845	0.47	+1.4
2,578,200	-		PS417_11845	0.47	+0.7
2,578,200	-		PS417_11845	0.47	+1.0
2,578,399	+		PS417_11845	0.69	+1.3
2,578,932	+				+1.0
2,578,932	+				+0.2
2,578,933	-				+1.3
2,579,312	+		PS417_11850	0.18	-0.2
2,579,424	+		PS417_11850	0.24	+1.0
2,579,426	+		PS417_11850	0.24	+3.9
2,579,427	-		PS417_11850	0.24	+1.9
2,579,427	-		PS417_11850	0.24	+0.5
2,579,427	-		PS417_11850	0.24	-0.8
2,579,578	-		PS417_11850	0.32	-0.3
2,579,777	+		PS417_11850	0.42	-0.2
2,579,778	-		PS417_11850	0.42	+1.3
2,579,803	-		PS417_11850	0.43	+0.1
2,579,966	+		PS417_11850	0.52	+2.1
2,579,967	-		PS417_11850	0.52	-3.2
2,580,467	+		PS417_11850	0.77	+0.4
2,580,468	-				+0.8
2,580,575	+				-1.4
2,580,954	+				+2.4
2,581,005	+				+0.1
2,581,005	+				-0.2
2,581,523	-		PS417_11855	0.53	-0.1
2,581,532	+		PS417_11855	0.54	+1.6
2,581,532	+		PS417_11855	0.54	+0.9
2,581,616	+		PS417_11855	0.63	+0.1
2,581,617	-		PS417_11855	0.63	+0.3
2,581,617	-		PS417_11855	0.63	+0.4
2,581,883	+				-0.6
2,581,883	+				+1.1
2,581,883	+				+0.7
2,581,883	+				+0.8
2,581,883	+				+1.0
2,581,884	-				+1.4
2,581,884	-				-2.0
2,581,884	-				+0.7
2,581,884	-				+1.4
2,581,885	+				+0.1
2,581,885	+				+1.7
2,581,885	+				+0.7
2,581,885	+				+1.4
2,581,885	+				+1.1
2,581,885	+				+0.5
2,581,885	+				+1.0
2,581,886	-				-1.3
2,581,886	-				+0.6
2,581,886	-				-0.7
2,581,886	-				-2.1
2,581,886	-				-0.5
2,581,886	-				-0.9
2,581,886	-				+0.1
2,581,889	+				+1.1
2,581,890	-				+0.3
2,581,890	-				+0.6