Experiment: P. simiae OR Antrim MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01130 and PS417_01135 are separated by 128 nucleotides PS417_01135 and PS417_01140 are separated by 14 nucleotides PS417_01140 and PS417_01145 overlap by 4 nucleotides
PS417_01130: PS417_01130 - L-glyceraldehyde 3-phosphate reductase, at 248,666 to 249,703
_01130
PS417_01135: PS417_01135 - taurine dioxygenase, at 249,832 to 250,668
_01135
PS417_01140: PS417_01140 - taurine ABC transporter permease, at 250,683 to 251,519
_01140
PS417_01145: PS417_01145 - taurine transporter ATP-binding subunit, at 251,516 to 252,295
_01145
Position (kb) 249
250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 248.861 kb on + strand, within PS417_01130 at 248.862 kb on - strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.011 kb on + strand, within PS417_01130 at 249.254 kb on + strand, within PS417_01130 at 249.365 kb on + strand, within PS417_01130 at 249.365 kb on + strand, within PS417_01130 at 249.691 kb on + strand at 249.692 kb on - strand at 249.692 kb on - strand at 249.809 kb on + strand at 249.810 kb on - strand at 249.841 kb on + strand at 249.842 kb on - strand at 249.842 kb on - strand at 249.842 kb on - strand at 250.053 kb on + strand, within PS417_01135 at 250.054 kb on - strand, within PS417_01135 at 250.268 kb on + strand, within PS417_01135 at 250.269 kb on - strand, within PS417_01135 at 250.426 kb on + strand, within PS417_01135 at 250.427 kb on - strand, within PS417_01135 at 250.454 kb on + strand, within PS417_01135 at 250.651 kb on - strand at 250.668 kb on + strand at 250.669 kb on - strand at 250.771 kb on - strand, within PS417_01140 at 250.771 kb on - strand, within PS417_01140 at 251.146 kb on + strand, within PS417_01140 at 251.623 kb on - strand, within PS417_01145
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1 remove 248,861 + PS417_01130 0.19 +0.4 248,862 - PS417_01130 0.19 +0.0 249,011 + PS417_01130 0.33 +1.1 249,011 + PS417_01130 0.33 +0.7 249,011 + PS417_01130 0.33 +0.0 249,254 + PS417_01130 0.57 -1.0 249,365 + PS417_01130 0.67 -1.0 249,365 + PS417_01130 0.67 -1.2 249,691 + -0.6 249,692 - -0.2 249,692 - +0.5 249,809 + -0.3 249,810 - +1.6 249,841 + -0.7 249,842 - -2.1 249,842 - +0.0 249,842 - -2.8 250,053 + PS417_01135 0.26 -0.6 250,054 - PS417_01135 0.27 -0.7 250,268 + PS417_01135 0.52 +0.1 250,269 - PS417_01135 0.52 -2.2 250,426 + PS417_01135 0.71 +0.5 250,427 - PS417_01135 0.71 -2.0 250,454 + PS417_01135 0.74 -0.2 250,651 - -0.6 250,668 + -0.4 250,669 - +0.0 250,771 - PS417_01140 0.11 +0.5 250,771 - PS417_01140 0.11 -0.7 251,146 + PS417_01140 0.55 +0.2 251,623 - PS417_01145 0.14 +0.7
Or see this region's nucleotide sequence