Strain Fitness in Pseudomonas simiae WCS417 around PS417_10820

Experiment: P. simiae OR Antrim MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae OR Antrim MOI 1
2,311,340	-				-1.6
2,311,457	-				+1.8
2,311,550	+				+1.8
2,311,550	+				+2.0
2,311,560	+				-1.4
2,311,560	+				-0.5
2,311,561	-				-0.7
2,311,592	+				+1.1
2,311,593	-				-0.5
2,311,904	-		PS417_10815	0.41	-0.7
2,312,120	+		PS417_10815	0.73	-0.3
2,312,120	+		PS417_10815	0.73	-1.8
2,312,121	-		PS417_10815	0.73	+0.3
2,312,140	+		PS417_10815	0.76	+0.5
2,312,331	-				+1.2
2,312,490	-				+0.4
2,312,490	-				+1.0
2,313,098	-		PS417_10820	0.39	+0.5
2,313,246	+		PS417_10820	0.46	+0.3
2,313,251	+		PS417_10820	0.47	+0.8
2,313,269	+		PS417_10820	0.48	-1.4
2,313,269	+		PS417_10820	0.48	-0.3
2,313,348	+		PS417_10820	0.51	-0.7
2,313,572	-		PS417_10820	0.62	+0.2
2,313,675	-		PS417_10820	0.68	-1.2
2,313,781	+		PS417_10820	0.73	-0.4
2,313,827	+		PS417_10820	0.75	-0.1
2,313,868	-		PS417_10820	0.77	-0.3
2,313,888	-		PS417_10820	0.78	-1.7
2,313,888	-		PS417_10820	0.78	+0.4
2,314,106	+		PS417_10820	0.89	-0.1
2,314,398	+				-1.5
2,314,795	+		PS417_10825	0.34	-0.9
2,314,796	-		PS417_10825	0.34	+0.1
2,314,796	-		PS417_10825	0.34	+0.4
2,314,829	-		PS417_10825	0.37	-0.8
2,314,829	-		PS417_10825	0.37	+0.0
2,314,996	+		PS417_10825	0.56	+0.8
2,315,012	-		PS417_10825	0.58	-0.2