Strain Fitness in Pseudomonas simiae WCS417 around PS417_00110

Experiment: P. simiae OR Antrim MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_00110 and PS417_00115 are separated by 130 nucleotides PS417_00110: PS417_00110 - tRNA threonylcarbamoyladenosine biosynthesis protein RimN, at 23,683 to 24,240 _00110 PS417_00115: PS417_00115 - quinone oxidoreductase, at 24,371 to 25,348 _00115 Position (kb) 23 24 25Strain fitness (log2 ratio) -3 -2 -1 0 1at 22.863 kb on - strandat 23.317 kb on + strandat 23.318 kb on - strandat 23.318 kb on - strandat 23.401 kb on - strandat 23.627 kb on - strandat 23.665 kb on + strandat 24.364 kb on + strandat 24.364 kb on + strandat 24.364 kb on + strandat 24.364 kb on + strandat 24.365 kb on - strandat 24.365 kb on - strandat 24.365 kb on - strandat 24.365 kb on - strandat 24.365 kb on - strandat 24.365 kb on - strandat 24.366 kb on + strandat 24.397 kb on + strandat 24.526 kb on + strand, within PS417_00115at 24.526 kb on + strand, within PS417_00115at 24.527 kb on - strand, within PS417_00115at 24.527 kb on - strand, within PS417_00115at 24.543 kb on + strand, within PS417_00115at 24.570 kb on + strand, within PS417_00115at 24.571 kb on - strand, within PS417_00115at 24.709 kb on - strand, within PS417_00115at 24.942 kb on + strand, within PS417_00115at 24.942 kb on + strand, within PS417_00115at 24.942 kb on + strand, within PS417_00115at 24.943 kb on - strand, within PS417_00115at 24.943 kb on - strand, within PS417_00115at 25.065 kb on + strand, within PS417_00115at 25.212 kb on + strand, within PS417_00115at 25.213 kb on - strand, within PS417_00115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 1
remove
22,863 - +0.2
23,317 + +0.8
23,318 - +0.1
23,318 - -0.8
23,401 - -0.1
23,627 - +0.7
23,665 + -0.4
24,364 + +0.1
24,364 + +1.0
24,364 + +0.7
24,364 + -0.5
24,365 - -1.7
24,365 - +0.2
24,365 - -1.4
24,365 - +0.9
24,365 - -0.4
24,365 - -1.0
24,366 + +0.2
24,397 + -0.2
24,526 + PS417_00115 0.16 +0.8
24,526 + PS417_00115 0.16 +0.4
24,527 - PS417_00115 0.16 -2.1
24,527 - PS417_00115 0.16 -0.7
24,543 + PS417_00115 0.18 -2.6
24,570 + PS417_00115 0.20 -0.4
24,571 - PS417_00115 0.20 -0.1
24,709 - PS417_00115 0.35 -0.8
24,942 + PS417_00115 0.58 -3.3
24,942 + PS417_00115 0.58 -0.9
24,942 + PS417_00115 0.58 -1.1
24,943 - PS417_00115 0.58 -0.4
24,943 - PS417_00115 0.58 +0.4
25,065 + PS417_00115 0.71 -1.0
25,212 + PS417_00115 0.86 -1.6
25,213 - PS417_00115 0.86 -1.1

Or see this region's nucleotide sequence